Abouelhoda
AKO
al
allout
analyzed
args
ataat
Bioinformatics
Boeke
ca
Center
cerevisiae
chr
chrAll
dbcluster
del
deletionscore
des
dna
EKW
Ellinghaus
exdrop
expr
FASTA
fsa
gaaat
genometools
GenomeTools
genomic
gff
GFF
ggaat
ggttc
Gremme
gt
gtaat
gttat
gz
gzip
htbp
http
indexname
insertionscore
kim
Kurtz
lcp
lLTR
longoutput
LTR
ltrharvest
LTRharvest
LTRs
matchscore
maxdistltr
maxlenltr
maxLTRdistance
maxLTRlength
maxtsd
maxTSDlength
mindistltr
minlenltr
minLTRdistance
minLTRlength
minseedlength
mintsd
minTSDlength
mis
mismatchscore
mkvtree
motifmis
motifmismatchesallowed
novo
nr
nt
Ohlebusch
org
outinner
outputfile
pl
pred
resultfile
retrotransposon
retrotransposons
rLTR
seedlength
sequenceontology
shtml
sim
similaritythreshold
singlets
stdout
suf
suffixerator
Suffixerator
tg
tgca
tis
TSD
TSDmaxlen
TSDminlen
TSDs
Vanguri
verbosemode
vmatch
Vmatch
Voytas
Willhoeft
www
xdrop
Xdrop
xdropbelowscore
