DDF.Analysis-class      Class "DDF.Analysis"
DDF.Data-class          S4 Class "DDF.Data"
Density-class           Class "Density"
Design.Summary-class    S4 Class "Design.Summary"
Detectability-class     S4 Class "Detectability"
LT.Design-class         Virtual Class "LT.Design" extends Class
                        "Survey.Design"
LT.Survey-class         Virtual Class "LT.Survey" extends class
                        "Survey"
LT.Survey.Results-class
                        S4 Class "LT.Survey.Results"
Line.Transect-class     S4 Class "Line.Transect"
Obs.Table-class         Class "Obs.Table"
PT.Design-class         Virtual Class "PT.Design" extends Class
                        "Survey.Design"
PT.Survey-class         Virtual Class "PT.Survey" extends class
                        "Survey"
Point.Transect-class    S4 Class "Point.Transect"
Population-class        Class "Population"
Population.Description-class
                        Class "Population.Description"
Population.Summary-class
                        S4 Class "Population.Summary"
Region-class            Class "Region"
Region.Table-class      S4 Class "Region.Table"
Sample.Table-class      Class "Sample.Table"
Simulation-class        Class "Simulation"
Simulation.Summary-class
                        Class "Simulation.Summary"
Single.Obs.DDF.Data-class
                        S4 Class "Single.Obs.DDF.Data"
Single.Obs.LT.Survey-class
                        Class "Single.Obs.LT.Survey"
Single.Obs.PT.Survey-class
                        Class "Single.Obs.PT.Survey"
Survey-class            Virtual Class "Survey"
Survey.Design-class     S4 Class "Survey.Design"
Survey.Results-class    S4 Class "Survey.Results"
Transect-class          S4 Virtual Class "Transect"
add.hotspot             S4 generic method to add a hotspot to the
                        density grid
check.sim.setup         check.sim.setup
cov.summary.list        Covariate Truncation Simulation Summaries
covmod.summary.list     Covariate Truncation Simulation Summaries
create.bins             Create bins from a set of binned distances and
                        a set of cutpoints.
create.region.table     S4 generic method to generate a region table
create.sample.table     S4 generic method to generate a sample table
create.survey.results   S4 generic method to simulate a survey
data.for.distance       data.for.distance
description.summary     Provides a description of the summary
                        object/output Prints a list of the terms used
                        in the simulation summary.
generate.population     S4 generic method to generate an instance of a
                        population
generate.transects      S4 generic method to generate an instance of a
                        design
get.N                   S4 generic method to return N
get.area                Returns the area of the region
get.distance.data       S4 generic method to extract distance data
histogram.N.ests        histogram.N.ests
make.ddf.analysis.list
                        Creates a list of DDF.Analysis objects
make.density            Creates a Density object
make.design             Creates a Survey.Design object
make.detectability      Creates a Detectablility object
make.population.description
                        Creates a Population.Description object
make.region             Creates a Region object
make.simulation         Creates a Simulation object
param.list              Parameter Estimates from Covariate Simulation
plot,DDF.Data,ANY-method
                        Plot
plot,Density,ANY-method
                        Plot
plot,Detectability,ANY-method
                        Plot
plot,LT.Survey.Results,ANY-method
                        Plot
plot,Line.Transect,ANY-method
                        Plot
plot,Point.Transect,ANY-method
                        Plot
plot,Population,ANY-method
                        Plot
plot,Region,ANY-method
                        Plot
plot,Survey.Results,ANY-method
                        Plot
rename.duplicates       Renumbers the object IDs for the duplicate
                        observations generated when bootstrapping
rtpois                  Randomly generates values from a zero-truncated
                        Poisson distribution
run                     S4 generic method to run a simulation
run.analysis            S4 generic method to run analyses
save.sim.results        save.sim.results
show,Design.Summary-method
                        show
show,Simulation-method
                        show
summary,Simulation-method
                        summary
summary.list            Truncation Simulation Summaries
transects.shp           Shapefile describing the transects
