DeLorean-package	DeLorean-package
adjust.by.cell.sizes	adjust.by.cell.sizes
alpha.for.rug	alpha.for.rug
analyse.noise.levels	analyse.noise.levels
analyse.variance	analyse.variance
anders.huber.cell.sizes	anders.huber.cell.sizes
aov.dl	aov.dl
avg.par.samples	avg.par.samples
calc.inducing.pseudotimes	calc.inducing.pseudotimes
calc.roughness	calc.roughness
centralise	centralise
cmp.profiles.plot	cmp.profiles.plot
cov.all.genes.conditioned	cov.all.genes.conditioned
cov.calc.dists	cov.calc.dists
cov.calc.dl.dists	cov.calc.dl.dists
cov.calc.gene	cov.calc.gene
cov.calc.gene.conditioned	cov.calc.gene.conditioned
cov.matern.32	cov.matern.32
cov.periodise	cov.periodise
create.ordering.ll.fn	create.ordering.ll.fn
de.lorean	de.lorean
de.lorean.stylesheet	de.lorean.stylesheet
default.num.cores	default.num.cores
DeLorean	DeLorean-package
dim.de.lorean	dim.de.lorean
estimate.cell.sizes	estimate.cell.sizes
estimate.hyper	estimate.hyper
examine.convergence	examine.convergence
expected.sample.var	expected.sample.var
expr.data.plot	expr.data.plot
filter_cells	filter_cells
filter_genes	filter_genes
find.best.tau	find.best.tau
find.good.ordering	find.good.ordering
find.smooth.tau	find.smooth.tau
fit.dl	fit.dl
fit.held.out	fit.held.out
fit.model	fit.model
fit.model.sample	fit.model.sample
fit.model.vb	fit.model.vb
gaussian.condition	gaussian.condition
gene.covariances	gene.covariances
get.posterior.mean	get.posterior.mean
get_model	get_model
gp.log.marg.like	gp.log.marg.like
gp.predict	gp.predict
gp.predictions.df	gp.predictions.df
guo.cell.meta	guo.expr
guo.expr	guo.expr
guo.gene.meta	guo.expr
held.out.melt	held.out.melt
held.out.posterior	held.out.posterior
held.out.posterior.by.variation	held.out.posterior.by.variation
held.out.posterior.filter	held.out.posterior.filter
held.out.posterior.join	held.out.posterior.join
held.out.select.genes	held.out.select.genes
inducing.covariance	inducing.covariance
init.orderings.vs.pseudotimes.plot	init.orderings.vs.pseudotimes.plot
is.de.lorean	is.de.lorean
knit.report	knit.report
kouno.cell.meta	kouno.expr
kouno.expr	kouno.expr
kouno.gene.meta	kouno.expr
make.fit.valid	make.fit.valid
make.init.fn	make.init.fn
make.predictions	make.predictions
marg.like.plot	marg.like.plot
melt.expr	melt.expr
mutate.profile.data	mutate.profile.data
optimise.best.sample	optimise.best.sample
ordering.block.move	ordering.block.move
ordering.improve	ordering.improve
ordering.invert	ordering.invert
ordering.is.valid	ordering.is.valid
ordering.maximise	ordering.maximise
ordering.metropolis.hastings	ordering.metropolis.hastings
ordering.move	ordering.move
ordering.random.block.move	ordering.random.block.move
ordering.random.move	ordering.random.move
ordering.test.score	ordering.test.score
orderings.plot	orderings.plot
partition.de.lorean	partition.de.lorean
permute.df	permute.df
permuted.roughness	permuted.roughness
plot.add.expr	plot.add.expr
plot.add.mean.and.variance	plot.add.mean.and.variance
plot.de.lorean	plot.de.lorean
plot.held.out.posterior	plot.held.out.posterior
prepare.for.stan	prepare.for.stan
print.de.lorean	print.de.lorean
process.posterior	process.posterior
profiles.plot	profiles.plot
pseudotime.plot	pseudotime.plot
pseudotimes.from.orderings	pseudotimes.from.orderings
pseudotimes.pair.plot	pseudotimes.pair.plot
report.file	report.file
Rhat.plot	Rhat.plot
roughness.of.permutations	roughness.of.permutations
roughness.of.sample	roughness.of.sample
roughness.test	roughness.test
roughnesses.plot	roughnesses.plot
seriation.find.orderings	seriation.find.orderings
tau.offsets.plot	tau.offsets.plot
test.fit	test.fit
test.mh	test.mh
test.robustness.de.lorean	test.robustness.de.lorean
windram.cell.meta	windram.expr
windram.expr	windram.expr
windram.gene.meta	windram.expr
