Alphabet	Alphabet
alphabet.dna	alphabet.dna
alphabet.dna.gap	alphabet.dna.gap
alphabet.protein	alphabet.protein
alphabet.protein.gap	alphabet.protein.gap
alphabet.rna	alphabet.rna
alphabet.rna.gap	alphabet.rna.gap
colorchart	colorchart
deprects	deprects
DLData	DLData
filter.by.conservation	filter.by.conservation
filter.by.dependencies	filter.by.dependencies
filter.by.gaps	filter.by.gaps
filterColumns	filterColumns
getDeps	getDeps
getPWM	getPWM
logo	logo
partition	partition
plotBlocks	plotBlocks
plotDeparcs	plotDeparcs
plotDeplogo	plotDeplogo
plotDepmatrix	plotDepmatrix
replaceColors	replaceColors
revcom	revcom
subBoxes	subBoxes
subLines	subLines
suggestColors	suggestColors
summary.DLData	summary.DLData
