FlywayNet-package       'FlywayNet' package: infer the structure of
                        migratory bird flyway networks given counts
estimate_migration_ABC
                        Estimates migration parameters using an ABC
                        method.
estimate_migration_MCEM
                        Estimates migration parameters using an MCEM
                        method.
estimate_migration_MCEM_C
                        Internal C function (do not use).
estimate_migration_from_trajectories
                        Estimates migration parameters using
                        trajectories.
estimate_migration_from_trajectories_C
                        Internal C function (do not use).
generate_modified_migration
                        Return a modified migration according
                        generative parameters.
generate_observedcounts
                        Generate observed counts from the set of bird
                        trajectories.
generate_random_migration
                        Generate a migration structure with a random
                        structure.
generate_toy_migration
                        Generate a toy migration structure with 5
                        sites.
generate_trajectories   Generate trajectories of birds.
generate_trajectories_C
                        Internal C function (do not use).
get_counts              Count birds on each site at each time step from
                        given set of trajectories.
get_counts_C            Internal C function (do not use).
get_freeparametersvalue
                        Extract free parameter values from a migration
                        structure.
get_observation_probability
                        Computes the probability of observations given
                        the birds count from trajectories.
get_observation_probability_C
                        Internal C function (do not use).
get_paramlikelihood     Computes, by simulation, the log-likelihood of
                        parameters
new_migration           Initialize a migration structure.
plot.migration          Plot a migration network from transition
                        probabilities and mean sojourn time parameters.
plot_observedcounts     Barplot observed counts at different sites and
                        time steps.
plot_trajectories       Barplot of birds counts par site and per time
                        step, given bird trajectories.
read_migration          Read a migration structure in a text file.
reestimate_migration_from_MCEMruns
                        Estimates migration parameters from multiple
                        MCEM runs
set_freeparametersvalue
                        Assign free parameter values to a migration
                        structure.
validate_migration      Check a migration structure.
write_migration         Write a migration structure in a text file.
