Package: HACSim
Type: Package
Title: Iterative Extrapolation of Species' Haplotype Accumulation
        Curves for Genetic Diversity Assessment
Version: 1.0.5
Date: 2019-12-21
Author: Jarrett D. Phillips [aut, cre], Steven H. French [ctb]
Maintainer: Jarrett D. Phillips <phillipsjarrett1@gmail.com>
Description: Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008>, Phillips et al. (2019) <doi:10.1002/ece3.4757> and Phillips et al. (2020) <doi: 10.7717/peerj-cs.243>. Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.
License: GPL-3
NeedsCompilation: yes
Imports: ape (>= 5.2), graphics (>= 3.5.1), pegas (>= 0.11), Rcpp (>=
        1.0.0), stats (>= 3.5.1), utils (>= 3.5.1)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.1
Packaged: 2020-01-06 14:56:07 UTC; jarrettphillips
Repository: CRAN
Date/Publication: 2020-01-07 21:50:05 UTC
Built: R 4.0.2; x86_64-apple-darwin17.0; 2020-07-17 13:11:10 UTC; unix
Archs: HACSim.so.dSYM
