Bluestone               Original marker data for hybrid tiger
                        salamander larvae collected from Bluestone
                        Quarry pond.
Cline.fit               Fit alternative cline functions to data from
                        one or more genetic loci.
Cline.plot              Graph genomic clines fit to data
HIC                     Closed form maximum-likelihood estimates of
                        ancestry and heterozygosity for diagnostic
                        markers
HIC3                    Closed form maximum-likelihood estimates of
                        ancestry and heterozygosity for diagnostic
                        markers in a three-way hybrid zone
HILL                    Hybrid Index Log Likelihood
HIclass                 Calculate likelihoods for early generation
                        hybrid genotype classes
HIest                   Find the joint maximum likelihood estimates of
                        ancestry and interclass heterozygosity in a
                        sample of hybrids.
HIest-package           Functions for estimating hybrid indices
                        (ancestry and heterozygosity) and fitting
                        genomic clines.
HIsurf                  Describe the joint likelihood surface of
                        ancestry and heterozygosity for a hybrid
                        genotype.
HItest                  Compare the likelihood of hybrid classification
                        to MLE estimates of ancestry and
                        heterozygosity.
HItest3                 Compare the likelihood of hybrid classification
                        to MLE estimates of ancestry and heterozygosity
                        for three-way hybrid zones.
gcline.fn               Fit a genomic cline using maximum likelihood
longX2                  Longs heterogeneity test for admixture
                        proportions in a single population.
spatial.AD              Simulate admixture in continuous, 2-dimensional
                        space
spatial.HZ              Simulate a hybrid zone in continuous,
                        2-dimensional space
thirdclass              Calculate likelihoods for early generation
                        hybrid genotype classes in a three-way hybrid
                        zone.
threeway                Find joint maximum-likelihood estimates of
                        ancestry and heterozygosity for a sample of
                        hybrids in a three-way hybrid zone
