MPR.genotyping-package
                        Maximum Parsimony of Recombination to Infer
                        Parental Genotypes
NumRecomEvents          calculate the number of recombination events
base2Allele             Get Initial Allele from SNP Matrix
base2Geno               Formatting the Matrix of SNP to Int Type
base2Geno_ori           Formatting the Matrix of SNP to Int Type(NA)
checkData               Data for check
correctFUNHMM           correct FUN HMM
correctGeno             Correct Geno
fSNP                    Example data of negative SNP
findBlockAndFilter      find Block And Filter
geno2Cross              geno to Cross
genoToBin               geno To Bin
genotypeCallsBayes      genotype Calls by Bayes
globalMPRByMarkers      MPR inference in whole chromosome
globalMPRRefine         refine SNPs by resampling
globalMPRwithoutMarkers
                        MPR without Markers
hmm.vitFUN.rils         Genotyping by HMM
localMPR                infer parental genotypes by minimizing the
                        number of recombination events
makeEmissionFUN         emission of HMM
markerData              Data of Markers
mergeBinMap             merge Bin Map
mergeBlocks             merge Blocks
myBaseData              Example SNP data(smaller)
phenoData               data of phenotype
phy2get.haldane.rils    transition of HMM
snpData                 Example SNP data
