.DesM	DesM
.dummyze	dummyze
.makePermSpaceID	makePermSpaceID
.makePValueMat	makePValueMat
.orthoX	orthoX
as.list	RankResults-method
as.list,RankResults-method	RankResults-method
BHS	BHS
FWEminP	FWEminP
initialize	initialize-methods
initialize,PermSpace-method	initialize-methods
iterNPC	iterNPC
NPC	NPC
PermSpace	PermSpace-class
PermSpace-class	PermSpace-class
plot	PermSpace-class
plot,PermSpace,PermSpace-method	PermSpace-class
plot,PermSpace-method	PermSpace-class
plot,SoupObject,SoupObject-method	SoupObject-class
print	print-methods
print,PermSpace,PermSpace-method	PermSpace-class
print,PermSpace-method	print-methods
print,PValueMat,PValueMat-method	PValueMat-class
print,PValueMat-method	print-methods
print,RankResults-method	print-methods
print,SoupObject,SoupObject-method	SoupObject-class
print,SoupObject-method	print-methods
PValueMat	PValueMat-class
PValueMat-class	PValueMat-class
rankingRule	rankingRule
RankResults	RankResults-class
RankResults-class	RankResults-class
show	show-methods
show,PermSpace,PermSpace-method	PermSpace-class
show,PermSpace-method	show-methods
show,PValueMat,PValueMat-method	PValueMat-class
show,PValueMat-method	show-methods
show,RankResults-method	show-methods
show,SoupObject,SoupObject-method	SoupObject-class
show,SoupObject-method	show-methods
SOUP	SOUP
SoupObject	SoupObject-class
SoupObject-class	SoupObject-class
t2p	t2p
