arkhe-package	arkhe-package
.AbundanceMatrix	AbundanceMatrix-class
.CompositionMatrix	CompositionMatrix-class
.CountMatrix	CountMatrix-class
.IncidenceMatrix	IncidenceMatrix-class
.IntegerMatrix	DataMatrix
.LogicalMatrix	DataMatrix
.NumericMatrix	DataMatrix
.OccurrenceMatrix	OccurrenceMatrix-class
.StratigraphicMatrix	StratigraphicMatrix-class
AbundanceMatrix-class	AbundanceMatrix-class
arkhe	arkhe-package
assert_dag	check-graph
assert_dimensions	check-attribute
assert_dimnames	check-attribute
assert_empty	check-attribute
assert_filled	check-attribute
assert_infinite	check-data
assert_length	check-attribute
assert_lengths	check-attribute
assert_matrix	check-matrix
assert_missing	check-data
assert_names	check-attribute
assert_numeric	check-numeric
assert_relation	check-numeric
assert_scalar	check-type
assert_trend	check-numeric
assert_type	check-type
assert_unique	check-data
as_composition	coerce
as_composition,ANY-method	coerce
as_composition-method	coerce
as_count	coerce
as_count,ANY-method	coerce
as_count-method	coerce
as_features	coerce
as_features,AbundanceMatrix-method	coerce
as_features-method	coerce
as_incidence	coerce
as_incidence,ANY-method	coerce
as_incidence-method	coerce
as_long	coerce
as_long,AbundanceMatrix-method	coerce
as_long,matrix-method	coerce
as_long-method	coerce
as_occurrence	coerce
as_occurrence,ANY-method	coerce
as_occurrence-method	coerce
as_stratigraphy	coerce
as_stratigraphy,ANY-method	coerce
as_stratigraphy-method	coerce
catch_conditions	conditions
catch_message	conditions
check-attribute	check-attribute
check-data	check-data
check-graph	check-graph
check-matrix	check-matrix
check-numeric	check-numeric
check-type	check-type
check_class	check_class
coerce	coerce
CompositionMatrix	CompositionMatrix-class
CompositionMatrix-class	CompositionMatrix-class
conditions	conditions
CountMatrix	CountMatrix-class
CountMatrix-class	CountMatrix-class
DataMatrix	DataMatrix
get	mutators
get_dates	mutators
get_dates,AbundanceMatrix-method	mutators
get_dates-method	mutators
get_groups	mutators
get_groups,AbundanceMatrix-method	mutators
get_groups-method	mutators
get_samples	mutators
get_samples,AbundanceMatrix-method	mutators
get_samples-method	mutators
get_taq	mutators
get_taq,AbundanceMatrix-method	mutators
get_taq-method	mutators
get_terminus	mutators
get_terminus,AbundanceMatrix-method	mutators
get_terminus-method	mutators
get_totals	mutators
get_totals,AbundanceMatrix-method	mutators
get_totals,OccurrenceMatrix-method	mutators
get_totals-method	mutators
get_tpq	mutators
get_tpq,AbundanceMatrix-method	mutators
get_tpq-method	mutators
has_dates	mutators
has_dates,AbundanceMatrix-method	mutators
has_dates-method	mutators
has_duplicates	predicate-utils
has_groups	mutators
has_groups,AbundanceMatrix-method	mutators
has_groups-method	mutators
has_infinite	predicate-utils
has_length	predicate-utils
has_missing	predicate-utils
has_names	predicate-utils
has_terminus	mutators
has_terminus,AbundanceMatrix-method	mutators
has_terminus-method	mutators
IncidenceMatrix	IncidenceMatrix-class
IncidenceMatrix-class	IncidenceMatrix-class
IntegerMatrix-class	DataMatrix
is_atomic	predicate-type
is_character	predicate-type
is_constant	predicate-trend
is_dag	predicate-graph
is_decreasing	predicate-trend
is_double	predicate-type
is_empty	predicate-utils
is_error	predicate-type
is_even	predicate-numeric
is_greater	predicate-trend
is_increasing	predicate-trend
is_integer	predicate-type
is_list	predicate-type
is_logical	predicate-type
is_lower	predicate-trend
is_message	predicate-type
is_negative	predicate-numeric
is_numeric	predicate-type
is_odd	predicate-numeric
is_positive	predicate-numeric
is_scalar_atomic	predicate-scalar
is_scalar_character	predicate-scalar
is_scalar_double	predicate-scalar
is_scalar_integer	predicate-scalar
is_scalar_list	predicate-scalar
is_scalar_logical	predicate-scalar
is_scalar_numeric	predicate-scalar
is_scalar_vector	predicate-scalar
is_square	predicate-matrix
is_symmetric	predicate-matrix
is_vector	predicate-type
is_warning	predicate-type
is_whole	predicate-numeric
is_zero	predicate-numeric
LogicalMatrix-class	DataMatrix
mutators	mutators
NumericMatrix-class	DataMatrix
OccurrenceMatrix-class	OccurrenceMatrix-class
predicate-graph	predicate-graph
predicate-matrix	predicate-matrix
predicate-numeric	predicate-numeric
predicate-scalar	predicate-scalar
predicate-trend	predicate-trend
predicate-type	predicate-type
predicate-utils	predicate-utils
remove	remove
remove_empty	remove
remove_empty,matrix-method	remove
remove_empty-method	remove
remove_Inf	remove
remove_Inf,matrix-method	remove
remove_Inf-method	remove
remove_NA	remove
remove_NA,matrix-method	remove
remove_NA-method	remove
remove_zero	remove
remove_zero,matrix-method	remove
remove_zero-method	remove
replace	replace
replace_Inf	replace
replace_Inf,matrix-method	replace
replace_Inf-method	replace
replace_NA	replace
replace_NA,matrix-method	replace
replace_NA-method	replace
replace_zero	replace
replace_zero,matrix-method	replace
replace_zero-method	replace
set	mutators
set_dates,AbundanceMatrix,NULL-method	mutators
set_dates,AbundanceMatrix,numeric-method	mutators
set_dates-method	mutators
set_dates<-	mutators
set_dates<-,AbundanceMatrix,NULL-method	mutators
set_dates<-,AbundanceMatrix,numeric-method	mutators
set_groups,AbundanceMatrix-method	mutators
set_groups-method	mutators
set_groups<-	mutators
set_groups<-,AbundanceMatrix-method	mutators
set_samples,AbundanceMatrix-method	mutators
set_samples-method	mutators
set_samples<-	mutators
set_samples<-,AbundanceMatrix-method	mutators
set_taq,AbundanceMatrix,NULL-method	mutators
set_taq,AbundanceMatrix,numeric-method	mutators
set_taq-method	mutators
set_taq<-	mutators
set_taq<-,AbundanceMatrix,NULL-method	mutators
set_taq<-,AbundanceMatrix,numeric-method	mutators
set_terminus,AbundanceMatrix,list-method	mutators
set_terminus,AbundanceMatrix,NULL-method	mutators
set_terminus-method	mutators
set_terminus<-	mutators
set_terminus<-,AbundanceMatrix,list-method	mutators
set_terminus<-,AbundanceMatrix,NULL-method	mutators
set_totals,AbundanceMatrix-method	mutators
set_totals-method	mutators
set_totals<-	mutators
set_totals<-,AbundanceMatrix-method	mutators
set_tpq,AbundanceMatrix,NULL-method	mutators
set_tpq,AbundanceMatrix,numeric-method	mutators
set_tpq-method	mutators
set_tpq<-	mutators
set_tpq<-,AbundanceMatrix,NULL-method	mutators
set_tpq<-,AbundanceMatrix,numeric-method	mutators
StratigraphicMatrix-class	StratigraphicMatrix-class
subset	subset
summary	summary
summary,AbundanceMatrix-method	summary
throw_error	conditions
throw_warning	conditions
validate	validate
[,AbundanceMatrix-method	subset
[<-,AbundanceMatrix-method	subset
[[<-,AbundanceMatrix-method	subset
_PACKAGE	arkhe-package
