# Generated by roxygen2: do not edit by hand

export(Cape)
export(calc_p)
export(cape2mpp)
export(direct_influence)
export(error_prop)
export(get_covar)
export(get_eigentraits)
export(get_geno)
export(get_marker_location)
export(get_marker_name)
export(get_network)
export(get_pairs_for_pairscan)
export(get_pheno)
export(get_stats_multiallele)
export(hist_pheno)
export(impute_missing_geno)
export(kinship)
export(load_input_and_run_cape)
export(marker2covar)
export(norm_pheno)
export(pairscan)
export(pheno2covar)
export(plink2cape)
export(plot_effects)
export(plot_full_network)
export(plot_network)
export(plot_pairscan)
export(plot_pheno_cor)
export(plot_singlescan)
export(plot_svd)
export(plot_variant_influences)
export(qnorm_pheno)
export(qtl2_to_cape)
export(read_parameters)
export(read_population)
export(remove_ind)
export(remove_kin_ind)
export(remove_markers)
export(remove_missing_genotype_data)
export(remove_unused_markers)
export(run_cape)
export(select_eigentraits)
export(select_markers_for_pairscan)
export(select_pheno)
export(singlescan)
export(write_population)
export(write_variant_influences)
import(R6)
import(caTools)
import(corpcor)
import(foreach)
import(here)
import(igraph)
import(parallel)
import(pheatmap)
import(propagate)
import(qtl)
import(qtl2convert)
import(tools)
import(yaml)
importFrom(Matrix,rankMatrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(abind,abind)
importFrom(abind,adrop)
importFrom(doParallel,registerDoParallel)
importFrom(evd,fgev)
importFrom(evd,qgev)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,pairs)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rasterImage)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,stripchart)
importFrom(graphics,text)
importFrom(graphics,xspline)
importFrom(qtl2,calc_genoprob)
importFrom(qtl2,calc_kinship)
importFrom(qtl2,genoprob_to_alleleprob)
importFrom(qtl2,read_cross2)
importFrom(regress,regress)
importFrom(shape,Arrowhead)
importFrom(stats,D)
importFrom(stats,anova)
importFrom(stats,as.formula)
importFrom(stats,coef)
importFrom(stats,coefficients)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,glm)
importFrom(stats,interaction.plot)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,qqplot)
importFrom(stats,residuals)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stats,vcov)
importFrom(stringr,str_replace)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)
