EnglandNewCases         Covid-19 Case Counts for England
EuropeCovid             Covid-19 data for European countries
EuropeCovid2            Covid-19 data for European countries
all_obs_types           Get a list of all observation types used in a
                        model
as.matrix.epimodel      Extract posterior samples
epidemia-package        Flexible Epidemic Modeling with epidemia
epiinf                  Model Latent Infections
epim                    Fit a Bayesian epidemiological model with
                        epidemia
epimodel-objects        Fitted Epidemiological Model Objects
epiobs                  Define Observational Models
epirt                   Model Reproduction Rates
evaluate_forecast       Posterior model evaluations
formula.epimodel        Formula method for epimodel objects
get_samps               Retrieve final states from sampled Markov
                        chains
get_x                   Extract X or Z from an epimodel object
hexp                    A hierarchical model for seeded infections
model.frame.epimodel    model.frame method for epimodel objects. Please
                        see 'model.frame' for more details.
ngrps.mixed             Returns the levels for each grouping factor in
                        the fitted object
pairs.epimodel          Pairs method for epimodel objects
plot.epimodel           Plot method for epimodel objects
plot_coverage           Plot coverage probability of posterior credible
                        intervals
plot_infections         Plot latent infections
plot_infectious         Plot total infectiousness over time.
plot_metrics            Plot CRPS, Median/Mean Absolute Error
plot_obs                Plot posterior predictive distributions
plot_rt                 Plot time-varying reproduction rates
posterior_coverage      Coverage of posterior credible intervals
posterior_infections    Generic function for getting posterior draws of
                        daily infections over time
posterior_infectious    Generic function for getting posterior draws of
                        total infectiousness over time
posterior_latent        Generic function for getting posterior draws of
                        a specified latent sequence
posterior_linpred       Gives the posterior linear predictor for the
                        reproduction numbers Will be extended for
                        observations in future versions
posterior_metrics       CRPS, Mean Absolute Error, Median Absolute
                        Error
posterior_predict.epimodel
                        Draws samples from the posterior predictive
                        distribution of the observations
posterior_rt            Generic function for getting posterior draws of
                        the time-varying reproduction rates
posterior_sample_size   Get posterior sample size from a fitted model
posterior_sample_size.epimodel
                        Plotting the posterior linear predictor for R
                        or ascertainment rates
print.epimodel          Print fitted model details
print.prior_summary.epimodel
                        Print method for 'prior_summary.epimodel'
                        objects
print.prior_summary_reg.epimodel
                        Print method for 'prior_summary_reg.epimodel'
                        objects
prior_summary.epimodel
                        Returns a summary of the prior distributions
                        used
rw                      Adds random walks with independent Gaussian
                        steps to the parameterization of the
                        time-varying reproduction number.
scaled_logit            Represents a 'scaled' logit link
shifted_gamma           A shifted gamma prior
summary.epimodel        Summary method for epimodel objects
terms.epimodel          Terms method for epimodel objects
terms_rw                Finds random walk terms in a formula object
