+,ph,ph-method          Sum Method for phase type distributions
EMstep_PADE             EM using Matlab algorithm for matrix
                        exponential in combination with Armadillo
EMstep_RK               EM step using Runge Kutta
EMstep_UNI              EM using Uniformization for matrix exponential
Fisher                  New Generic for obtaining the Fisher
                        Information of Survival Matrix Distributions
Fisher,sph-method       Fisher Information Method for sph Class
LInf_norm               L-oo norm of a matrix
LRT                     New Generic for doing a likelihood ratio test
                        between two Matrix Distribution models
LRT,ph,ph-method        LRT Method for ph Class
a_rungekutta            Runge Kutta for the calculation of the a
                        vectors in a EM step
cdf                     New Generic for the Distribution of Matrix
                        Distributions
cdf,iph-method          Distribution Method for inhomogeneous phase
                        type distributions
cdf,ph-method           Distribution Method for phase type
                        distributions
clone_matrix            Clone a matrix
clone_vector            Clone a vector
coef,iph-method         Coef Method for iph Class
coef,ph-method          Coef Method for ph Class
coef,sph-method         Coef Method for sph Class
cumulateMatrix          Cumulate matrix
cumulateVector          Cumulate vector
default_step_length     Default size of the steps in the RK
dens                    New Generic for the Density of Matrix
                        Distributions
dens,iph-method         Density Method for inhomogeneous phase type
                        distributions
dens,ph-method          Density Method for phase type distributions
derivativeMatrixweibull
                        Derivative of matrix Weibull
diagonal_vector         Creates a matrix with the given vector in the
                        diagonal
embeddedMC              Embedded Markov chain of a sub-intensity matrix
evaluate                New Generic for Evaluating Survival Matrix
                        Distributions
evaluate,sph-method     Evaluation Method for sph Class
fit                     New Generic for Estimating Matrix Distributions
fit,ph-method           Fit Method for ph Class
haz                     New Generic for the Hazard rate of Matrix
                        Distributions
haz,ph-method           Hazard rate Method for phase type distributions
initialState            Initial state of Markov jump process
iph                     Constructor Function for inhomogeneous phase
                        type distributions
iph-class               Inhomogeneous Phase Type distributions
logLik,ph-method        logLik Method for ph Class
logLikelihoodMgev_PADE
                        Loglikelihood of matrix-GEV using Pade
logLikelihoodMgev_RK    Loglikelihood of matrix GEV using RK
logLikelihoodMgev_UNI   Loglikelihood of matrix-GEV using
                        Uniformization
logLikelihoodMgompertz_PADE
                        Loglikelihood of matrix-Gompertz using Pade
logLikelihoodMgompertz_PADEs
                        Loglikelihood of matrix-Gompertz using Pade
logLikelihoodMgompertz_RK
                        Loglikelihood of matrix Gompertz using RK
logLikelihoodMgompertz_RKs
                        Loglikelihood of matrix-Gompertz using RK
logLikelihoodMgompertz_UNI
                        Loglikelihood of matrix-Gompertz using
                        Uniformization
logLikelihoodMgompertz_UNIs
                        Loglikelihood of matrix-Gompertz using
                        Uniformization
logLikelihoodMloglogistic_PADE
                        Loglikelihood of matrix-loglogistic using Pade
logLikelihoodMloglogistic_PADEs
                        Loglikelihood of matrix-loglogistic using Pade
logLikelihoodMloglogistic_RK
                        Loglikelihood of matrix Log-Logistic using RK
logLikelihoodMloglogistic_RKs
                        Loglikelihood of matrix-loglogistic using RK
logLikelihoodMloglogistic_UNI
                        Loglikelihood of matrix-loglogistic using
                        Uniformization
logLikelihoodMloglogistic_UNIs
                        Loglikelihood of matrix-loglogistic using
                        Uniformization
logLikelihoodMlognormal_PADE
                        Loglikelihood of matrix-lognormal using Pade
logLikelihoodMlognormal_PADEs
                        Loglikelihood of matrix-lognormal using Pade
logLikelihoodMlognormal_RK
                        Loglikelihood of matrix LogNormal using RK
logLikelihoodMlognormal_RKs
                        Loglikelihood of matrix-lognormal using RK
logLikelihoodMlognormal_UNI
                        Loglikelihood of matrix-lognormal using
                        Uniformization
logLikelihoodMlognormal_UNIs
                        Loglikelihood of matrix-lognormal using
                        Uniformization
logLikelihoodMpareto_PADE
                        Loglikelihood of matrix-Pareto using Pade
logLikelihoodMpareto_PADEs
                        Loglikelihood of matrix-Pareto using Pade
logLikelihoodMpareto_RK
                        Loglikelihood of matrix Pareto using RK
logLikelihoodMpareto_RKs
                        Loglikelihood of matrix-Pareto using RK
logLikelihoodMpareto_UNI
                        Loglikelihood of matrix-Pareto using
                        Uniformization
logLikelihoodMpareto_UNIs
                        Loglikelihood of matrix-Pareto using
                        Uniformization
logLikelihoodMweibull_PADE
                        Loglikelihood of matrix-Weibull using Pade
logLikelihoodMweibull_PADEs
                        Loglikelihood of matrix-Weibull using Pade
logLikelihoodMweibull_RK
                        Loglikelihood of matrix Weibull using RK
logLikelihoodMweibull_RKs
                        Loglikelihood of matrix-Weibull using RK
logLikelihoodMweibull_UNI
                        Loglikelihood of matrix-Weibull using
                        Uniformization
logLikelihoodMweibull_UNIs
                        Loglikelihood of matrix-Weibull using
                        Uniformization
logLikelihoodPH_PADE    Loglikelihood of PH using Pade
logLikelihoodPH_PADEs   Loglikelihood of PH using Pade
logLikelihoodPH_RK      Loglikelihood using RK
logLikelihoodPH_RKs     Loglikelihood of PH using RK
logLikelihoodPH_UNI     Loglikelihood using Uniformization
logLikelihoodPH_UNIs    Loglikelihood of PH using Uniformization
matrixExpSum_arma       Computes e^(Sx) base on the values on
                        powerVector
matrixMax               Maximum entry in a matrix
matrixMaxDiagonal       Maximum entry in the diagonal of a matrix
matrix_VanLoan          Creates the matrix (A1, B1 ; 0, A2)
matrix_VanLoanArma      Creates the matrix (A1, B1 ; 0, A2)
matrix_exponential      Matrix exponential algorithm
matrix_exponential_slow
                        Matrix exponential algorithm
matrix_inverse          Inverse of a matrix
matrix_inverse_slow     Inverse of a matrix
matrix_power            Computes A^n
matrix_product          Product of two matrices
matrix_product_slow     Product of two matrices
matrix_sum              Add matrices
matrixdist-package      Statistics for Matrix Distributions
maximum                 New Generic for Maximum of two Matrix
                        Distributions
maximum,iph,iph-method
                        Maximum Method for inhomogeneous phase type
                        distributions
maximum,ph,ph-method    Maximum Method for phase type distributions
mgevcdf                 Matrix GEV cdf
mgevden                 Matrix GEV density
mgompertzcdf            Matrix Gompertz cdf
mgompertzden            Matrix Gompertz density
minimum                 New Generic for Minimum of two Matrix
                        Distributions
minimum,iph,iph-method
                        Minimum Method for inhomogeneous phase type
                        distributions
minimum,ph,ph-method    Minimum Method for phase type distributions
mloglogisticcdf         Matrix Log-Logistic cdf
mloglogisticden         Matrix Log-Logistic density
mlognormalcdf           Matrix LogNormal cdf
mlognormalden           Matrix LogNormal density
moment                  New Generic for Moment of Matrix Distributions
moment,ph-method        Moment Method for phase type distributions
mparetocdf              Matrix Pareto cdf
mparetoden              Matrix Pareto density
mweibullcdf             Matrix Weibull cdf
mweibullden             Matrix Weibull density
newState                New state in a Markov jump process
ph                      Constructor Function for phase type
                        distributions
ph-class                Phase Type distributions
phcdf                   Phase-type cdf or tail
phdensity               Phase-type density
quan                    New Generic for the Quantile of Matrix
                        Distributions
quan,ph-method          Quantile Method for phase type distributions
random_structure        Random structure of a phase-type
reg                     New Generic for Regression with Matrix
                        Distributions
reg,ph-method           Regression Method for ph Class
reversTransformData     Applies the inverse of the GEV but giving back
                        the vector in reverse order
riph                    Random inhomogeneous phase-type
rmatrixgev              Random matrix GEV
rphasetype              Random phase-type
runge_kutta             Runge Kutta for the calculation of the a,b and
                        c vectors in a EM step
show,iph-method         Show Method for inhomogeneous phase type
                        distributions
show,ph-method          Show Method for phase type distributions
show,sph-method         Show Method for survival phase type objects
sim                     New Generic for Simulating Matrix Distributions
sim,iph-method          Simulation Method for inhomogeneous phase type
                        distributions
sim,ph-method           Simulation Method for phase type distributions
solve_linear_system     Solves a system with multiple right hand sides
sph                     Constructor Function for Survival phase type
                        objects
sph-class               Survival Analysis for Phase Type distributions
sumPH                   Computes the initial distribution and
                        sub-intensity of the sum of PH
vectorOfMatrices_arma   Computes elements S^n / n! until the value size
vectorOfMatrices_arma2
                        Computes elements S^n / n! until the value size
