Tax4Fun2_KEGG           The KEGG data files used in the cal_tax4fun2
                        function of trans_func class.
clone                   Copy an R6 class object completely
color_palette_20        A color palette for 20 elements.
dataset                 The dataset in the microeco package
dropallfactors          Remove all factors in a data frame
env_data_16S            The environmental factors for the 16S dataset
                        in the microeco package
fungi_func_FUNGuild     The FUNGuild database for fungi trait
                        identification in the microeco package
fungi_func_FungalTraits
                        The FungalTraits database for fungi trait
                        identification in the microeco package
microtable              Create microtable object to store and manage
                        all the basic files.
otu_table_16S           The OTU table of the 16S dataset in the
                        microeco package
otu_table_ITS           The OTU table of the ITS dataset in the
                        microeco package
phylo_tree_16S          The phylogenetic tree of 16S dataset in the
                        microeco package
prok_func_FAPROTAX      The modified FAPROTAX trait database in the
                        microeco package
prok_func_NJC19_list    The modified NJC19 database in the microeco
                        package
rep_fasta_16S           The fasta file of 16S dataset used in tax4fun2
                        method.
sample_info_16S         The sample information of 16S dataset in the
                        microeco package
sample_info_ITS         The sample information of ITS dataset in the
                        microeco package
taxonomy_table_16S      The taxonomic information of 16S dataset in the
                        microeco package
taxonomy_table_ITS      The taxonomic information of ITS dataset in the
                        microeco package
tidy_taxonomy           Clear up the taxonomic table to make taxonomic
                        assignments consistent.
trans_abund             Create trans_abund object to transform
                        taxonomic abundance for plotting.
trans_alpha             Create trans_alpha object for alpha diveristy
                        statistics and plotting.
trans_beta              Create trans_beta object for the analysis of
                        distance matrix of beta-diversity.
trans_classifier        Create trans_classifier object for
                        machine-learning-based model prediction.
trans_diff              Create trans_diff object for the differential
                        analysis on the taxonomic abundance.
trans_env               Create trans_env object for the analysis of the
                        effects of environmental factors on
                        communities.
trans_func              Create trans_func object for functional
                        analysis.
trans_network           Create trans_network object for co-occurrence
                        network analysis.
trans_nullmodel         Create trans_nullmodel object.
trans_venn              Create trans_venn object.
