Package: mlmm.gwas
Type: Package
Title: Pipeline for GWAS Using MLMM
Version: 1.0.6
Author: Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut], Timothee Flutre [aut]
Maintainer: Clement Mabire <clement.mabire@inra.fr>
Description: Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.3.0)
Imports: multcompView(>= 0.1-7), multcomp(>= 1.4-8), coxme(>= 2.2-5),
        sommer(>= 3.2), Matrix(>= 1.2-10)
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-08-05 14:33:59 UTC; cmabire
Repository: CRAN
Date/Publication: 2019-08-05 15:20:05 UTC
Built: R 4.0.2; ; 2020-07-16 15:39:04 UTC; unix
