addChildren	ped_modify
addDaughter	ped_modify
addMarkers	marker_attach
addParents	ped_modify
addSon	ped_modify
afreq	marker_getset
afreq.list	marker_getset
afreq.marker	marker_getset
afreq.ped	marker_getset
afreq<-	marker_getset
afreq<-.list	marker_getset
afreq<-.marker	marker_getset
afreq<-.ped	marker_getset
alleles	marker_getset
alleles.list	marker_getset
alleles.marker	marker_getset
alleles.ped	marker_getset
allowsMutations	marker_prop
allowsMutations.default	marker_prop
allowsMutations.list	marker_prop
allowsMutations.marker	marker_prop
allowsMutations.ped	marker_prop
ancestors	ped_subgroups
ancestralPed	ped_basic
as.data.frame.ped	as.data.frame.ped
as.matrix.ped	as.matrix.ped
as.ped	as.ped
as.ped.data.frame	as.ped
as_kinship2_pedigree	plot.ped
branch	ped_modify
breakLoops	inbreedingLoops
children	ped_subgroups
chrom	marker_getset
chrom.list	marker_getset
chrom.marker	marker_getset
chrom.ped	marker_getset
chrom<-	marker_getset
chrom<-.list	marker_getset
chrom<-.marker	marker_getset
chrom<-.ped	marker_getset
commonAncestors	ped_subgroups
commonDescendants	ped_subgroups
connectedComponents	connectedComponents
cousinPed	ped_basic
descendants	ped_subgroups
doubleCousins	ped_complex
doubleFirstCousins	ped_complex
emptyMarker	marker_prop
emptyMarker.default	marker_prop
emptyMarker.list	marker_prop
emptyMarker.marker	marker_prop
emptyMarker.ped	marker_prop
famid	famid
famid.ped	famid
famid<-	famid
famid<-.ped	famid
father	ped_subgroups
females	ped_subgroups
findLoopBreakers	inbreedingLoops
findLoopBreakers2	inbreedingLoops
founderInbreeding	founderInbreeding
founderInbreeding<-	founderInbreeding
founders	ped_subgroups
foundersFirst	ped_internal
freqDatabase	freqDatabase
fullSibMating	ped_complex
generations	ped_utils
genotype	marker_getset
genotype.marker	marker_getset
genotype.ped	marker_getset
genotype<-	marker_getset
genotype<-.marker	marker_getset
genotype<-.ped	marker_getset
getAlleles	getAlleles
getComponent	getComponent
getFreqDatabase	freqDatabase
getFrequencyDatabase	freqDatabase
getGenotypes	getGenotypes
getLocusAttributes	locusAttributes
getMap	getMap
getMarkers	marker_select
getSex	getSex
grandparents	ped_subgroups
halfCousinPed	ped_basic
halfSibPed	ped_basic
halfSibStack	ped_complex
hasCommonAncestor	ped_utils
hasInbredFounders	ped_utils
hasMarkers	nMarkers
hasParentsBeforeChildren	ped_internal
hasSelfing	ped_utils
hasUnbrokenLoops	ped_utils
inbreedingLoops	inbreedingLoops
internalID	ped_internal
is.marker	is.marker
is.markerList	is.marker
is.ped	is.ped
is.pedList	is.ped
is.singleton	is.ped
isXmarker	marker_prop
isXmarker.default	marker_prop
isXmarker.list	marker_prop
isXmarker.marker	marker_prop
isXmarker.ped	marker_prop
labels.list	relabel
labels.ped	relabel
leaves	ped_subgroups
linearPed	ped_basic
locusAttributes	locusAttributes
males	ped_subgroups
marker	marker
marker_attach	marker_attach
marker_getset	marker_getset
marker_prop	marker_prop
marker_select	marker_select
mendelianCheck	mendelianCheck
mergePed	mergePed
mother	ped_subgroups
mutmod	marker_getset
mutmod.list	marker_getset
mutmod.marker	marker_getset
mutmod.ped	marker_getset
mutmod<-	marker_getset
mutmod<-.list	marker_getset
mutmod<-.marker	marker_getset
mutmod<-.ped	marker_getset
nAlleles	marker_prop
nAlleles.default	marker_prop
nAlleles.list	marker_prop
nAlleles.marker	marker_prop
nAlleles.ped	marker_prop
name	marker_getset
name.list	marker_getset
name.marker	marker_getset
name.ped	marker_getset
name<-	marker_getset
name<-.list	marker_getset
name<-.marker	marker_getset
name<-.ped	marker_getset
nephews_nieces	ped_subgroups
newMarker	newMarker
newPed	newPed
nMarkers	nMarkers
nonfounders	ped_subgroups
nTyped	marker_prop
nTyped.default	marker_prop
nTyped.list	marker_prop
nTyped.marker	marker_prop
nTyped.ped	marker_prop
nuclearPed	ped_basic
offspring	ped_subgroups
parents	ped_subgroups
parentsBeforeChildren	ped_internal
ped	ped
pedsize	ped_utils
pedtools	pedtools
ped_basic	ped_basic
ped_complex	ped_complex
ped_internal	ped_internal
ped_modify	ped_modify
ped_subgroups	ped_subgroups
ped_utils	ped_utils
peelingOrder	ped_utils
plot.ped	plot.ped
plot.pedList	plot.ped
plot.singleton	plot.ped
plotPedList	plotPedList
posMb	marker_getset
posMb.marker	marker_getset
posMb.ped	marker_getset
posMb<-	marker_getset
posMb<-.marker	marker_getset
posMb<-.ped	marker_getset
print.nucleus	print.nucleus
print.ped	print.ped
quadHalfFirstCousins	ped_complex
randomPed	randomPed
readFreqDatabase	freqDatabase
readFrequencyDatabase	freqDatabase
readPed	readPed
relabel	relabel
removeIndividuals	ped_modify
removeMarkers	marker_select
reorderPed	ped_internal
restorePed	as.matrix.ped
selectMarkers	marker_select
selfingPed	ped_basic
setAlleles	getAlleles
setFreqDatabase	freqDatabase
setFrequencyDatabase	freqDatabase
setLocusAttributes	locusAttributes
setMap	getMap
setMarkers	marker_attach
setSex	getSex
siblings	ped_subgroups
singleton	ped
sortGenotypes	sortGenotypes
spouses	ped_subgroups
subnucs	ped_utils
subset.ped	ped_modify
swapSex	getSex
tieLoops	inbreedingLoops
transferMarkers	transferMarkers
typedMembers	ped_subgroups
unrelated	ped_subgroups
untypedMembers	ped_subgroups
validatePed	validatePed
whichMarkers	marker_select
writeFreqDatabase	freqDatabase
writeFrequencyDatabase	freqDatabase
writePed	writePed
