exp_links               Calculate expected number of links in a sample
falsediscoveryrate      Calculate false discovery rate of a sample
gen_dist_sim            Simulations of the genetic distance
                        distribution
gen_dists               Calculate genetic distance distribution
get_optim_roc           Find optimal ROC threshold
obs_pairs_mtml          Expected number of observed pairs assuming
                        multiple-transmission and multiple-linkage
obs_pairs_mtsl          Expected number of observed pairs assuming
                        multiple-transmission and single-linkage
obs_pairs_stsl          Expected number of observed pairs assuming
                        single-transmission and single-linkage
prob_trans_mtml         Probability of transmission assuming
                        multiple-transmission and multiple-linkage
prob_trans_mtsl         Probability of transmission assuming
                        multiple-transmission and single-linkage
prob_trans_stsl         Probability of transmission assuming
                        single-transmission and single-linkage
samplesize              Calculate sample size
sens_spec_calc          Calculate sensitivity and specificity
sens_spec_roc           Make ROC from sensitivity and specificity
true_pairs              Calculate expected number of true transmission
                        pairs
true_pairs_mtml         Expected number of true transmission pairs
                        assuming multiple-transmission and
                        multiple-linkage
true_pairs_mtsl         Expected number of true transmission pairs
                        assuming multiple-transmission and
                        single-linkage
true_pairs_stsl         Expected number of true transmission pairs
                        assuming single-transmission and single-linkage
truediscoveryrate       Calculate true discovery rate of a sample
