Package: plinkFile
Title: 'PLINK' (and 'GCTA') File Helpers
Version: 0.1.0
Authors@R: person("Xiaoran", "Tong", email = "tongxia1@msu.edu", role = c("aut", "cre"))
Description: Provide function that reads binary genotype produced by 'PLINK' <https://www.cog-genomics.org/plink/1.9/input#bed> into a R matrix, or scan the genotype one variant at a time like apply(), it also provides functions that reads and writes genotype relatedness/kinship matrices created by 'PLINK' <https://www.cog-genomics.org/plink/1.9/distance#make_rel> or 'GCTA' <https://cnsgenomics.com/software/gcta/#MakingaGRM>. Currently it does not support writing back into 'PLINK' binary, it is best used for bringing data produced by 'PLINK' and 'GCTA' into R environment.
Depends: R (>= 3.1)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
NeedsCompilation: no
Packaged: 2020-04-03 20:19:36 UTC; xtong
Author: Xiaoran Tong [aut, cre]
Maintainer: Xiaoran Tong <tongxia1@msu.edu>
Repository: CRAN
Date/Publication: 2020-04-05 15:30:02 UTC
Built: R 4.0.2; ; 2020-07-15 17:52:49 UTC; unix
