# Generated by roxygen2: do not edit by hand

export(createFullHaplotype)
export(deletionHeatmap)
export(deletionsByBinom)
export(deletionsByVpooled)
export(geneUsage)
export(hapDendo)
export(hapHeatmap)
export(nonReliableVGenes)
export(plotDeletionsByBinom)
export(plotDeletionsByVpooled)
export(plotHaplotype)
import(dendextend)
import(ggplot2)
import(methods)
import(utils)
importFrom(RColorBrewer,brewer.pal)
importFrom(alakazam,getGene)
importFrom(cowplot,background_grid)
importFrom(cowplot,draw_label)
importFrom(cowplot,get_legend)
importFrom(cowplot,ggdraw)
importFrom(cowplot,plot_grid)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,.SD)
importFrom(data.table,CJ)
importFrom(data.table,data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setkey)
importFrom(data.table,setorderv)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_)
importFrom(dplyr,as_data_frame)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,combine)
importFrom(dplyr,count)
importFrom(dplyr,count_)
importFrom(dplyr,data_frame)
importFrom(dplyr,data_frame_)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,do)
importFrom(dplyr,filter)
importFrom(dplyr,filter_)
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,group_by_)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rename_)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,select_)
importFrom(dplyr,slice)
importFrom(dplyr,summarize)
importFrom(dplyr,summarize_)
importFrom(dplyr,summarize_at)
importFrom(dplyr,transmute)
importFrom(dplyr,transmute_)
importFrom(dplyr,ungroup)
importFrom(fastmatch,"%fin%")
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,segment)
importFrom(grDevices,dev.control)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,recordPlot)
importFrom(graphics,axis)
importFrom(graphics,grid)
importFrom(graphics,image)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(grid,gpar)
importFrom(grid,textGrob)
importFrom(gridExtra,arrangeGrob)
importFrom(gtable,gtable_filter)
importFrom(gtools,ddirichlet)
importFrom(htmlwidgets,saveWidget)
importFrom(plotly,ggplotly)
importFrom(plotly,subplot)
importFrom(plyr,rbind.fill)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(splitstackshape,cSplit)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,binom.test)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,setNames)
importFrom(stats,weighted.mean)
importFrom(stringi,stri_detect_fixed)
importFrom(stringi,stri_detect_regex)
importFrom(tidyr,separate_rows)
importFrom(tigger,sortAlleles)
