GC.adjust               GC Content Adjustment
NGS.CNV                 CNV Analysis Pipeline for WGS and WES Data
SNP.CNV                 CNV Analysis Pipeline for SNP array Data
cnv.call                CNV Calling from Sequencing Data
cnv.data                Construct Data Frame for CNV Inference with NGS
                        Data
compute.var             Internal Functions and Data
diagnosis.cluster.plot
                        Visualize Genome-Wide SCNA Profile in 2D
                        Cluster Plot
diagnosis.seg.plot.chr
                        Visualize Segmentation Results for Diagnosis
genome.wide.plot        Visualize Genome-Wide SCNA Profile
joint.segmentation      Joint Segmentation on log2ratio and log2mBAF
                        Dimensions
merging.segments        Merge Adjacent Segments
reannotate.CNV.res      Gene Annotation
saasCNV-package         Somatic Copy Number Alteration Analysis Using
                        Sequencing and SNP Array Data
snp.cnv.data            Construct Data Frame for CNV Inference with SNP
                        Array Data
snp.refine.boundary     Refine Segment Boundaries
vcf2txt                 Covert VCF File to A Data Frame
