spectralAnalysis-package	spectralAnalysis
addMessage	addMessage
addPreprocessingStep	addPreprocessingStep
as.data.frame,SpectraInTime-method	SpectraInTime-class
baselineCorrect	baselineCorrect
baselineCorrect,SpectraInTime-method	baselineCorrect
changeDevSettings	changeDevSettings
checkCompatible	checkCompatible
checkCompatible,ProcessTimes,SpectraInTime-method	checkCompatible
checkCompatible,SpectraInTime,ProcessTimes-method	checkCompatible
checkForRedundantSources	checkForRedundantSources
checkIdenticalClass	checkIdenticalClass
checkMethod	checkMethod
checkTimeUnit	checkTimeUnit
completeSourceMatrix	completeSourceMatrix
computeNMFResidu	computeNMFResidu
convertListToS4	convertListToS4
convertS4ToList	convertS4ToList
dim,SpectraInTime-method	SpectraInTime-class
e	e
ElementsToSelect-class	ElementsToSelect-class
extractSummarySpecs	SpectraInTime-class
first	first
firstSpectrum	firstSpectrum
firstSpectrum,numeric-method	firstSpectrum
firstSpectrum,SpectraInTime-method	firstSpectrum
flagVectorInInterval	flagVectorInInterval
getClosestElements	getClosestElements
getDefaultSumFunc	getDefaultSumFunc
getDefaultTimeFormat	getDefaultTimeFormat
getElements	getElements
getElements,ElementsToSelect-method	getElements
getExperimentName	getExperimentName
getExperimentName,SpectraInTime-method	getExperimentName
getExtraInfo	getExtraInfo
getExtraInfo,SpectraInTime-method	getExtraInfo
getListOfSpectraExample	getListOfSpectraExample
getNMFInputMatrix	getNMFInputMatrix
getPathProcessTimesExample	getPathProcessTimesExample
getPreprocessing	getPreprocessing
getPreprocessing,SpectraInTime-method	getPreprocessing
getProcessTimesExample	getProcessTimesExample
getProcessTimesFrameExample	getProcessTimesFrameExample
getRange	getRange
getRange,RangeToSubset-method	getRange
getSpectra	getSpectra
getSpectra,SpectraInTime-method	getSpectra
getSpectra,SummaryByWavelengths-method	SummaryByWavelengths-class
getSpectraInTimeExample	getSpectraInTimeExample
getStartTime	getStartTime
getStartTime,SpectraInTime-method	getStartTime
getTimeConversionFactor	getTimeConversionFactor
getTimePoints	getTimePoints
getTimePoints,SpectraInTime-method	getTimePoints
getUnits	getUnits
getUnits,SpectraInTime-method	getUnits
getWavelengths	getWavelengths
getWavelengths,SpectraInTime-method	getWavelengths
includeRedundantSources	includeRedundantSources
initializeNMFModel	initializeNMFModel
last	last
lastSpectrum	lastSpectrum
lastSpectrum,numeric-method	lastSpectrum
lastSpectrum,SpectraInTime-method	lastSpectrum
loadAllSPCFiles	loadAllSPCFiles
localBaselineCorrect	localBaselineCorrect
nonNegativePreprocessing	nonNegativePreprocessing
normalize	normalize
normalize,SpectraInTime-method	normalize
plot	SpectraInTime-class
plot,SpectraInTime,missing-method	SpectraInTime-class
plot,SummaryByWavelengths,ANY-method	SummaryByWavelengths-class
plot.list	SpectraInTime-class
plotlyAxis	plotlyAxis
predictNNLS	predictNNLS
preprocess	preprocess
preprocess,SpectraInTime,list-method	preprocess
preprocess,SpectraInTime,SpectraInTime-method	preprocess
preprocessSpectraInTimeWithList	preprocessSpectraInTimeWithList
ProcessTimes	ProcessTimes-class
ProcessTimes-class	ProcessTimes-class
ProcessTimesFrame-class	ProcessTimesFrame-class
r	r
r,numeric,numeric-method	r
r,RangeToSubset,missing-method	r
RangeToSubset	RangeToSubset-class
Rangetosubset	RangeToSubset-class
rangetosubset	RangeToSubset-class
RangeToSubset-class	RangeToSubset-class
read	saveSpectra
readProcessTimes	readProcessTimes
readSPC	readSPC
readSpectra	saveSpectra
removeRedundantSources	removeRedundantSources
runNMF	runNMF
save	saveSpectra
saveSpectra	saveSpectra
scaleNMFResult	scaleNMFResult
setExperimentName<-	setExperimentName
setExperimentName<-,SpectraInTime-method	setExperimentName
setTimePointsAlt<-	setTimePointsAlt
setTimePointsAlt<-,SpectraInTime-method	setExperimentName
show,SummaryByWavelengths-method	SpectraInTime-class
smooth	smooth
smooth,SpectraInTime-method	smooth
SpectraInTime	SpectraInTime-class
spectraInTime	SpectraInTime-class
spectraintime	SpectraInTime-class
SpectraInTime-class	SpectraInTime-class
spectralAnalysis	spectralAnalysis
spectralIntegration	spectralIntegration
spectralNMF	spectralNMF
spectralNMFList	spectralNMFList
spectralNormalization	spectralNormalization
spectralSmoothAndDifferentiate	spectralSmoothAndDifferentiate
subset-methods	subset-methods
subset.SpectraTime	subset.SpectraTime
summary,SpectraInTime-method	SpectraInTime-class
SummaryByWavelengths	SummaryByWavelengths-class
SummaryByWavelengths-class	SummaryByWavelengths-class
TemperatureInfo	ProcessTimes-class
temperatureInfo	ProcessTimes-class
temperatureinfo	ProcessTimes-class
testListOfSpectra	testListOfSpectra
timeAlign	timeAlign
timeAlign,list,character-method	timeAlign
timeAlign,list,ProcessTimesFrame-method	timeAlign
timeAlign,SpectraInTime,ProcessTimes-method	timeAlign
timeAlign.listOfSpectra	timeAlign.listOfSpectra
timeAlign.SpectraInTime	timeAlign.SpectraInTime
trapz	trapz
upsampleNMFResult	upsampleNMFResult
wavelengthAlign	wavelengthAlign
wavelengthAlign,SpectraInTime,list-method	wavelengthAlign
wavelengthAlign,SpectraInTime,SpectraInTime-method	wavelengthAlign
[,SpectraInTime,ANY,ANY,ANY-method	subset-methods
[,SpectraInTime,ANY,ANY-method	subset-methods
[,SpectraInTime,ANY,missing,ANY-method	subset-methods
[,SpectraInTime,ANY,missing-method	subset-methods
[,SpectraInTime,missing,ANY,ANY-method	subset-methods
[,SpectraInTime,missing,ANY-method	subset-methods
[,SpectraInTime,missing,missing,ANY-method	subset-methods
[,SpectraInTime,missing,missing-method	subset-methods
[,SpectraInTime-method	subset-methods
[ProcessTimes,SpectraInTime-method	checkCompatible
[SpectraInTime,ProcessTimes-method	checkCompatible
