Package: BisqueRNA
Title: Decomposition of Bulk Expression with Single-Cell Sequencing
Version: 1.0.5
Authors@R: c(
  person(given = 'Brandon', family = 'Jew', email = 'brandon.jew@ucla.edu', role = c('aut', 'cre')),
  person(given = 'Marcus', family = 'Alvarez', role = 'aut')
  )
Description: Provides tools to accurately estimate cell type abundances 
    from heterogeneous bulk expression. A reference-based method utilizes
    single-cell information to generate a signature matrix and transformation
    of bulk expression for accurate regression based estimates. A marker-based
    method utilizes known cell-specific marker genes to measure relative
    abundances across samples.
    For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.0.2
biocViews:
Imports: Biobase, limSolve, methods, stats
Suggests: Seurat, plyr, knitr, rmarkdown, testthat
URL: https://www.biorxiv.org/content/10.1101/669911v1
BugReports: https://github.com/cozygene/bisque/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-05-23 20:57:46 UTC; bjew
Author: Brandon Jew [aut, cre],
  Marcus Alvarez [aut]
Maintainer: Brandon Jew <brandon.jew@ucla.edu>
Repository: CRAN
Date/Publication: 2021-05-23 21:10:03 UTC
Built: R 4.1.0; ; 2021-05-25 23:40:41 UTC; unix
