RevEcoR-package	RevEcoR
%.%	compose
anno.species	anno.species
calculateCooperationIndex	calculateCooperationIndex
competitionIndex	Interactions
complementarityIndex	Interactions
compose	compose
confidencescore	confidencescore-methods
confidencescore,seedset-method	confidencescore-methods
confidencescore-methods	confidencescore-methods
getGsMN	getGsMN-methods
getGsMN,seedset-method	getGsMN-methods
getGsMN-methods	getGsMN-methods
getOrgMetabolicData	getOrgMetabolicData
getSeedSets	getSeedSets
gut_microbiome	gut_microbiome
Interactions	Interactions
kegg_buc	kegg_buc
kegg_ptr	kegg_ptr
KosarajuSCC	KosarajuSCC
len	len-methods
len,seedset-method	len-methods
len-methods	len-methods
nonseed	nonseed-methods
nonseed,seedset-method	nonseed-methods
nonseed-methods	nonseed-methods
reconstructGsMN	reconstructGsMN
RefDbcache	RefDbcache
RevEcoR	RevEcoR
seedset-class	seedset-class
seedSize	seedSize-methods
seedSize,seedset-method	seedSize-methods
seedSize-methods	seedSize-methods
show	show-methods
show,seedset-method	show-methods
show-methods	show-methods
