deconstructSigs         deconstructSigs
example.output          Example output of whichSignatures()
makePie                 Plots the weights from whichSignatures()
mut.to.sigs.input       Converts mutation list to correct input format
plotSignatures          Plots the result from whichSignatures()
plotTumor               Plots a tumor profile
randomly.generated.tumors
                        Values for 100 randomly generated tumor samples
sample.mut.ref          Example input to mut.to.sigs.input()
signatures.cosmic       Published Signatures from Sanger COSMIC
signatures.nature2013   Published Signatures from Alexandrov et al 2013
tri.counts.exome        The counts of every trinuclotide frequency in
                        an exome
tri.counts.genome       The counts of every trinuclotide frequency in a
                        genome
vcf.to.sigs.input       Converts a VCF file to correct input format
whichSignatures         Which signatures are present
