Package: nodeSub
Type: Package
Title: Simulate DNA Alignments Using Node Substitutions
Version: 1.2.5
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Description: Simulate DNA sequences for the node substitution model.
    In the node substitution model, substitutions accumulate additionally 
    during a speciation event, providing a potential mechanistic explanation for 
    substitution rate variation. This package provides tools to simulate
    such a process, simulate a reference process with only substitutions along
    the branches, and provides tools to infer phylogenies from alignments. More
    information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
URL: https://github.com/thijsjanzen/nodeSub
BugReports: https://github.com/thijsjanzen/nodeSub
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.0
VignetteBuilder: knitr
LinkingTo: Rcpp
Depends: Rcpp, ape
Imports: apTreeshape, phangorn, tibble, DDD, Rmpfr, assertthat,
        pbapply, phylobase, geiger, babette, beautier, beastier,
        mauricer, tracerer, rappdirs, testit, stringr
Suggests: testthat, TreeSim, dplyr, knitr, rmarkdown, ggplot2,
        magrittr, tidyr, nLTT, RPANDA
NeedsCompilation: yes
Packaged: 2022-08-19 11:57:04 UTC; p251362
Repository: CRAN
Date/Publication: 2022-08-19 12:30:05 UTC
Built: R 4.1.2; x86_64-apple-darwin17.0; 2022-08-20 11:56:23 UTC; unix
Archs: nodeSub.so.dSYM
