GenePathwayOncoplots    draw an GenePathwayOncoplots
PTMB_matrix             PTMB_matrix, the Pathway-based Tumor Mutational
                        Burden matrix
final_character         final_character, the example's final signature
gene_path               gene_path, the pathways geneset
genesmbol               genesmbol, the coding genes' length
get_PTMB                Calculate the Pathway-based Tumor Mutational
                        Burden.
get_final_signature     Filter cancer-specific dysfunction pathways.
get_mut_matrix          Converts MAF into mutation matrix.
mut_matrix              mut_matrix, mutations matrix
plotKMcurves            Drawing Kaplan Meier Survival Curves Using the
                        final survival-related PTMB.
plotMutInteract         Exact tests to detect mutually exclusive,
                        co-occuring and altered genesets or pathways.
plotROC                 plot the ROC curve
sur                     sur, the samples' survival data
