Package: spatPomp
Type: Package
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Version: 0.31.0.0
Date: 2023-01-10
Authors@R: c(
  person("Kidus", "Asfaw", email = "kidusasfaw1990@gmail.com", role = c("aut")),
  person("Edward", "Ionides", email = "ionides@umich.edu",role = c("cre","aut")),
  person("Aaron A.", "King", email = "kingaa@umich.edu", role = c("aut")),
  person("Allister", "Ho", email = "allistho@umich.edu", role = c("ctb")),
  person("Joonha", "Park", email = "j.park@ku.edu", role = c("ctb")),
  person("Jesse", "Wheeler", email = "jeswheel@umich.edu", role = c("ctb")),
  person("Jifan", "Li", email = "jifanli@umich.edu", role = c("ctb")))
URL: https://github.com/kidusasfaw/spatPomp
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. To do so, it relies on and extends a number of facilities that the 'pomp' package provides for inference on time series data using partially-observed Markov process (POMP) models. Implemented methods include filtering and inference methods in Park and Ionides (2020) <doi:10.1007/s11222-020-09957-3>, Rebeschini and van Handel (2015) <doi:10.1214/14-AAP1061>, Evensen and van Leeuwen (1996) <doi:10.1029/94JC00572> and Ionides et al. (2021) <doi:10.1080/01621459.2021.1974867>. Pre-print statistical software article: Asfaw et al. (2021) <arXiv:2101.01157>.
SystemRequirements: For Windows users, Rtools (see
        https://cran.r-project.org/bin/windows/Rtools/).
License: GPL-3
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/kidusasfaw/spatPomp/issues/
Depends: pomp (>= 4.5.2), R(>= 4.1), methods
LinkingTo: pomp
Suggests: testthat, doParallel (>= 1.0.11), parallel, doRNG
Imports: foreach, dplyr, tidyr, stringr, abind, rlang, magrittr,
        ggplot2
Collate: 'spatPomp_class.R' 'abf.R' 'abfir.R' 'get_covariate_names.R'
        'as_data_frame.R' 'bm.R' 'bm2.R' 'bm2_kalman_logLik.R'
        'bm_kalman_logLik.R' 'bpfilter.R' 'city_data_UK.R' 'safecall.R'
        'pstop.R' 'undefined.R' 'spatPomp.R' 'dunit_measure.R' 'enkf.R'
        'eunit_measure.R' 'gbm.R' 'girf.R' 'he10.R' 'he10coordinates.R'
        'he10demography.R' 'he10measles.R' 'he10mle.R' 'iter_filter.R'
        'ibpf.R' 'ienkf.R' 'igirf.R' 'iubf.R' 'loglik.R' 'lorenz.R'
        'measles.R' 'measlesUK.R' 'munit_measure.R' 'package.R'
        'pipe.R' 'plot.R' 'print.R' 'runit_measure.R' 'simulate.R'
        'spatPomp_Csnippet.R' 'spatPomp_workhorses.R' 'unit_names.R'
        'vec_dmeasure.R' 'vec_rmeasure.R' 'vunit_measure.R'
RoxygenNote: 7.2.3
NeedsCompilation: yes
Packaged: 2023-01-16 19:27:26 UTC; ionides
Author: Kidus Asfaw [aut],
  Edward Ionides [cre, aut],
  Aaron A. King [aut],
  Allister Ho [ctb],
  Joonha Park [ctb],
  Jesse Wheeler [ctb],
  Jifan Li [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>
Repository: CRAN
Date/Publication: 2023-01-16 20:10:02 UTC
Built: R 4.1.2; x86_64-apple-darwin17.0; 2023-01-17 12:45:39 UTC; unix
Archs: spatPomp.so.dSYM
