| abundExamples | Example relative abundance estimates from simulated data |
| calcMantel | Calculate Mantel correlation (rM) from points and/or distances. |
| calcMC | Migratory connectivity strength function |
| calcPsi | Calculate psi (transition probabilities between sites in two phases of the annual cycle) |
| calcStrength | Migratory connectivity strength function |
| calcTransition | Calculate psi (transition probabilities between sites in two phases of the annual cycle) |
| diffCorr | Pairwise differences between two or more independent Mantel correlation estimates |
| diffMantel | Pairwise differences between two or more independent Mantel correlation estimates |
| diffMC | Pairwise differences between two or more independent MC estimates |
| diffStrength | Pairwise differences between two or more independent MC estimates |
| distFromPos | Distance matrix from position matrix |
| estCorr | Estimate Mantel correlation (rM) from geolocator, GPS, and/or raster data. |
| estMantel | Estimate Mantel correlation (rM) from geolocator, GPS, and/or raster data. |
| estMC | Estimate migratory connectivity |
| estPsi | Estimate psi (transition probabilities between locations in two phases of the annual cycle) |
| estStrength | Estimate MC, migratory connectivity strength |
| estTransition | Estimate psi (transition probabilities between locations in two phases of the annual cycle) |
| getCMRexample | Grab (from https://github.com/SMBC-NZP/MigConnectivity) example RMark transition probability estimates obtained from simulated data |
| getIsoMap | Get Isoscape map getIsoMap |
| isoAssign | Generate probabilistic isotope assignments |
| MigConnectivity | MigConnectivity: A package for quantifying migratory connectivity pattern and strength for migratory animals |
| modelCountDataJAGS | Estimates population-level relative abundance from count data |
| OVENdata | Ovenbird light-level geolocator and GPS necessary data |
| plot.estMigConnectivity | Basic plot function for estMigConnectivity objects |
| plot.intrinsicAssign | Basic plot function for the different isoAssign outputs |
| projections | Map projections |
| reversePi | Reverse transition probabilities and origin relative abundance |
| reversePsiRelAbund | Reverse transition probabilities and origin relative abundance |
| reverseTransition | Reverse transition probabilities and origin relative abundance |
| reverseTransitionRelAbund | Reverse transition probabilities and origin relative abundance |
| sampleOriginDist | Example origin and target site positions and distances on a 2-D plane |
| sampleOriginN | Example origin site abundances and relative abundances |
| sampleOriginPos | Example origin and target site positions and distances on a 2-D plane |
| sampleOriginRelN | Example origin site abundances and relative abundances |
| samplePsis | Example transition probabilities (psis) between origin and target sites |
| sampleTargetDist | Example origin and target site positions and distances on a 2-D plane |
| sampleTargetPos | Example origin and target site positions and distances on a 2-D plane |
| simCMRData | Simulate capture-mark-reencounter (CMR) migratory movement data |
| simCountData | Simulates Breeding Bird Survey-style count data |
| simGLData | Simulate geolocator (GL) migratory movement data |
| simMove | Simulates position of birds by individual, season, year, and month. |
| simProbData | Simulate Dirichlet-based probability table data |
| simTelemetryData | Simulate telemetry/GPS data |
| weightAssign | Calculate Weights for Isotope Assignments weightAssign |