* using log directory 'd:/Rcompile/CRANpkg/local/4.6/ivolcano.Rcheck'
* using R version 4.6.0 (2026-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-06-09 11:46:24 UTC
* checking for file 'ivolcano/DESCRIPTION' ... OK
* this is package 'ivolcano' version '0.0.6'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ivolcano' can be installed ... OK
* checking installed package size ... INFO
  installed size is 36.2Mb
  sub-directories of 1Mb or more:
    doc      35.1Mb
    extdata   1.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s] OK
* checking whether the package can be unloaded cleanly ... [2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s] ERROR
Error(s) in re-building vignettes:
--- re-building 'ivolcano.qmd' using html


processing file: ivolcano.qmd
Error:
! No esummary records found in file
Backtrace:
    ▆
 1. └─fanyi::gene_summary(top_eg)
 2.   └─fanyi:::gene_summary_ncbi(entrez)
 3.     └─fanyi:::.get_entrez_summary(newitem)
 4.       └─rentrez::entrez_summary(db = "gene", id = entrez)
 5.         ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
 6.         └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)

Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! No esummary records found in file
---
Backtrace:
    ▆
 1. └─fanyi::gene_summary(top_eg)
 2.   └─fanyi:::gene_summary_ncbi(entrez)
 3.     └─fanyi:::.get_entrez_summary(newitem)
 4.       └─rentrez::entrez_summary(db = "gene", id = entrez)
 5.         ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
 6.         └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Execution halted
WARN: Error encountered when rendering files
Error: processing vignette 'ivolcano.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
  -----------------------------
  
  
  processing file: ivolcano.qmd
  Error:
  ! No esummary records found in file
  Backtrace:
  ▆
  1. └─fanyi::gene_summary(top_eg)
  2.  └─fanyi:::gene_summary_ncbi(entrez)
  3.  └─fanyi:::.get_entrez_summary(newitem)
  4.  └─rentrez::entrez_summary(db = "gene", id = entrez)
  5.  ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
  6.  └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
  
  Quitting from ivolcano.qmd:106-126 [unnamed-chunk-5]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error:
  ! No esummary records found in file
  ---
  Backtrace:
  ▆
  1. └─fanyi::gene_summary(top_eg)
  2.  └─fanyi:::gene_summary_ncbi(entrez)
  3.  └─fanyi:::.get_entrez_summary(newitem)
  4.  └─rentrez::entrez_summary(db = "gene", id = entrez)
  5.  ├─rentrez:::parse_esummary(whole_record, v, always_return_list)
  6.  └─rentrez:::parse_esummary.list(whole_record, v, always_return_list)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Execution halted
  WARN: Error encountered when rendering files
  
Caused by error in `processx::run()`:
! System command 'quarto.exe' failed
--- failed re-building 'ivolcano.qmd'

SUMMARY: processing the following file failed:
  'ivolcano.qmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 1 ERROR