TidySet-class           A tidy class to represent a set
activate                Determine the context of subsequent
                        manipulations.
add_column              Add column
add_elements            Add elements to a TidySet
add_relation            Add relations
add_relations           Add relations to a TidySet
add_sets                Add sets to a TidySet
adjacency               Adjacency
arrange.TidySet         Arrange the order of a TidySet
as.data.frame.TidySet   Transforms a TidySet to a data.frame
as.list.TidySet         Convert to list
c,TidySet-method        Combine Values into a Vector or List
cardinality             Cardinality or membership of sets
cartesian               Create the cartesian product of two sets
complement              Complement TidySet
complement_element      Complement of elements
complement_set          Complement of a set
dimnames.TidySet        Dimnames of a TidySet
droplevels.TidySet      Drop unused elements and sets
element_size            Calculates the size of the elements
elements                Elements of the TidySet
extract-TidySet         Extract
filter.TidySet          Filter TidySet
getGAF                  Read a GAF file
getGMT                  Import GMT (Gene Matrix Transposed) files
getOBO                  Read an OBO file
group                   Create a new set from existing elements
group_by.TidySet        group_by TidySet
incidence               Incidence
independent             Independence of the sets
intersection            Intersection of two or more sets
is.fuzzy                Check if a TidySet is fuzzy.
is_nested               Are some sets as elements of other sets?
length.TidySet          Length of the TidySet
length_set              Calculates the probability
lengths,TidySet-method
                        Lengths of the TidySet
move_to                 Move columns between slots
multiply_probabilities
                        Probability of a vector of probabilities
mutate.TidySet          Mutate
nElements               Number of elements
nRelations              Number of relations
nSets                   Number of sets
name_elements           Name elements
name_elements<-         Rename elements
name_sets               Name sets
name_sets<-             Rename sets
names.TidySet           Names of a TidySet
naming                  Name an operation
power_set               Create the power set
pull.TidySet            Pull from a TidySet
relations               Relations of the TidySet
remove_column           Remove column
remove_element          Remove elements
remove_relation         Remove a relation
remove_set              Remove sets
rename_elements         Rename elements
rename_set              Rename sets
select.TidySet          select from a TidySet
set_size                Calculates the size of a set
set_symbols             A subset of symbols related to sets
sets                    Sets of the TidySet
show,TidySet-method     Method to show the TidySet object
size                    Size
subtract                Subtract
tidySet.GeneSetCollection
                        Create a TidySet object
union                   Join sets
union_closed            Union closed sets
union_probability       Calculates the probability of a single length
