73bdbeed59ec9854b5b63233ebd153ba *DESCRIPTION
75de0fe6613c0cb7267d4115dec0159f *LICENSE
5759c59e5ac9c0b879999131d9968630 *NAMESPACE
e27357e7f0fe869313e7e2c6ac2ec509 *R/RcppExports.R
d35c618ad174cec8a6b2fef974c4fee3 *R/data.R
a2c5950dc218414cf8f3251e2af95ce0 *R/helpers.R
1ca764eb756cd47bf530130982268412 *R/utils.R
d0028ac65d07fe28adaf3c46d29983ad *README.md
e9754397a92512547051d1588bc5662b *build/vignette.rds
4ffaa2ee75baea64b9069037046f05f6 *data/Evers_CRISPRn_RT112.rda
606faf9f32351f73e2ab63545d51f9d7 *data/Sanson_CRISPRn_A375.rda
393be4aedee3a71e120492ce60c16eea *inst/doc/cb2-input-handling.R
47be5921409c260e4cc1d1ecfbe3fb88 *inst/doc/cb2-input-handling.Rmd
3dfbbd3a4163cd59ee7cc96ca95010f7 *inst/doc/cb2-input-handling.html
b04b61e81ccb36550f7148e0c5eb1cff *inst/doc/cb2-tutorial.R
dc1a9596f8d9f47aa30f27167c9d209d *inst/doc/cb2-tutorial.Rmd
b7871608ac8e16dda3c793f3b4c01917 *inst/doc/cb2-tutorial.html
7caa3925001fcd5b96b0005003547eaf *inst/extdata/toydata/Base1.fastq
6cf0a8ac82eae578e9d51c162cafe613 *inst/extdata/toydata/Base2.fastq
1f18ec364a0e9cd12293a8cc61046188 *inst/extdata/toydata/High1.fastq
f38f7584d527b80fba902f050cf28588 *inst/extdata/toydata/High2.fastq
5bd8c3a850f938fc81165ecbaca4abb5 *inst/extdata/toydata/Low1.fastq
fc3b83b4506f3d7b1bb9f052902e94ec *inst/extdata/toydata/Low2.fastq
f8aaa00f9498b01e40d71e9d24fc2f23 *inst/extdata/toydata/gzipped/Base1.fastq.gz
a63e7bad54aa87a4d0fdedd8a21676a0 *inst/extdata/toydata/gzipped/Base2.fastq.gz
ae9720c2d7649392e2d51d96b6068695 *inst/extdata/toydata/gzipped/High1.fastq.gz
34f907dcffe6cbe75e1bc12c08cca293 *inst/extdata/toydata/gzipped/High2.fastq.gz
db9a1f953df9bda510fec8bad50d4f87 *inst/extdata/toydata/gzipped/Low1.fastq.gz
dc2e96e31aa51400381980f686b7f4dc *inst/extdata/toydata/gzipped/Low2.fastq.gz
26e2347380412f059eab3394a1b308e2 *inst/extdata/toydata/sg2gene.csv
e82e1f971a399359efafbc27deb0d32d *inst/extdata/toydata/sg2seq.tsv
ac57ee2d93bc9d8ff564c5dbbc3cef47 *inst/extdata/toydata/small_sample.fasta
4c0ef094001d93f4ad1e27efd69f048e *inst/extdata/toydata/small_sample_dup.fasta
fd29ceb066e7583cb672ae1c96ef74d0 *man/Evers_CRISPRn_RT112.Rd
8b2b1e794ddb11c27da7d1bccead1fcf *man/Sanson_CRISPRn_A375.Rd
7c70e3848507b2e9facadcb244701739 *man/calc_mappability.Rd
ccceb3645f09008c24894a8b161e2bad *man/figures/hexsticker.png
4effad862ee930776564210caa832b64 *man/fit_ab.Rd
6043f53bf593e84fa5f8b79a4a0e9618 *man/get_CPM.Rd
9a62ffd0372f942b987dd9c8fef4c963 *man/join_count_and_design.Rd
e16bc54da0e5daa330810173b4a58e1e *man/measure_gene_stats.Rd
5c8b955e2346784ee859107acd79d018 *man/measure_sgrna_stats.Rd
0c4071e4abb8f23ca51d02b19f60a567 *man/plot_PCA.Rd
174fb81a4990dfdda14e44eb8ea7162a *man/plot_corr_heatmap.Rd
879e19551331542d9bd1c8d91bbde416 *man/plot_count_distribution.Rd
2c68546e05c76867ffcaa8788d052c79 *man/plot_dotplot.Rd
6818954ca110bc9d2cd5ba144e352e2f *man/quant.Rd
3b4a5d86a7297cfea780fe46c12cc3cd *man/rep_row.Rd
adfe7c33bb635ee1d187e76fd2f1ef4b *man/run_estimation.Rd
ac5f7168b803a2536e2e414e41841d66 *man/run_sgrna_quant.Rd
5bc40b89d04786af82a6ee82c8ef93ec *src/AdaptiveHash.h
dcc656f91508013d4b2da35d213f356f *src/CB2.cpp
531e87971a4468f68872453f8ea2eee6 *src/Makevars
531e87971a4468f68872453f8ea2eee6 *src/Makevars.win
c6b7999a4abbe00360025e89a86a32cb *src/RcppExports.cpp
3c76a7a8babb4b4526c2bf87bc41ff88 *tests/testthat.R
2612e0a1851427fec413c8b06e8d2e2b *tests/testthat/test.toydata.R
47be5921409c260e4cc1d1ecfbe3fb88 *vignettes/cb2-input-handling.Rmd
dc1a9596f8d9f47aa30f27167c9d209d *vignettes/cb2-tutorial.Rmd
819461df2a1dbebcf89cd7348755aa8f *vignettes/references.bib
