Last updated on 2025-12-15 02:49:48 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.6 | 111.98 | 271.68 | 383.66 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.6 | 81.45 | 172.70 | 254.15 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.6 | 228.00 | 439.59 | 667.59 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 3.7 | 223.00 | 450.44 | 673.44 | OK | |
| r-devel-windows-x86_64 | 3.6 | 126.00 | 249.00 | 375.00 | OK | |
| r-patched-linux-x86_64 | 3.6 | 120.74 | 256.64 | 377.38 | OK | |
| r-release-linux-x86_64 | 3.6 | 115.44 | 246.10 | 361.54 | ERROR | |
| r-release-macos-arm64 | 3.7 | 21.00 | 79.00 | 100.00 | OK | |
| r-release-macos-x86_64 | 3.7 | 76.00 | 275.00 | 351.00 | OK | |
| r-release-windows-x86_64 | 3.6 | 125.00 | 248.00 | 373.00 | OK | |
| r-oldrel-macos-arm64 | 3.7 | 21.00 | 93.00 | 114.00 | NOTE | |
| r-oldrel-macos-x86_64 | 3.7 | 77.00 | 222.00 | 299.00 | NOTE | |
| r-oldrel-windows-x86_64 | 3.6 | 156.00 | 336.00 | 492.00 | OK |
Version: 3.6
Check: examples
Result: ERROR
Running examples in ‘DR.SC-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DR.SC
> ### Title: Joint dimension reduction and spatial clustering
> ### Aliases: DR.SC DR.SC.Seurat
> ### Keywords: Dimension reduction Spatial clustering
>
> ### ** Examples
>
>
> ## we generate the spatial transcriptomics data with lattice neighborhood, i.e. ST platform.
> data(seu)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seu <- NormalizeData(seu, verbose=FALSE)
> # choose 100 highly variable features
> # seu <- FindVariableFeatures(seu, nfeatures = 100)
> # maxIter = 2 is only used for illustration, and user can use default.
> # seu1 <- DR.SC(seu, K=4, platform = 'ST', maxIter=2,verbose=FALSE)
>
> # choose spatially variable features (SVGs)
> seu <- FindSVGs(seu, nfeatures = 40, verbose=FALSE)
Error:
! The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─DR.SC::FindSVGs(seu, nfeatures = 40, verbose = FALSE)
2. ├─SeuratObject::GetAssayData(seu, assay = assay, slot = "counts")
3. └─SeuratObject:::GetAssayData.Seurat(seu, assay = assay, slot = "counts")
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 3.6
Check: examples
Result: ERROR
Running examples in ‘DR.SC-Ex.R’ failed
The error most likely occurred in:
> ### Name: DR.SC
> ### Title: Joint dimension reduction and spatial clustering
> ### Aliases: DR.SC DR.SC.Seurat
> ### Keywords: Dimension reduction Spatial clustering
>
> ### ** Examples
>
>
> ## we generate the spatial transcriptomics data with lattice neighborhood, i.e. ST platform.
> data(seu)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp
Attaching package: ‘SeuratObject’
The following objects are masked from ‘package:base’:
intersect, t
> seu <- NormalizeData(seu, verbose=FALSE)
> # choose 100 highly variable features
> # seu <- FindVariableFeatures(seu, nfeatures = 100)
> # maxIter = 2 is only used for illustration, and user can use default.
> # seu1 <- DR.SC(seu, K=4, platform = 'ST', maxIter=2,verbose=FALSE)
>
> # choose spatially variable features (SVGs)
> seu <- FindSVGs(seu, nfeatures = 40, verbose=FALSE)
Error:
! The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─DR.SC::FindSVGs(seu, nfeatures = 40, verbose = FALSE)
2. ├─SeuratObject::GetAssayData(seu, assay = assay, slot = "counts")
3. └─SeuratObject:::GetAssayData.Seurat(seu, assay = assay, slot = "counts")
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.7
Check: installed package size
Result: NOTE
installed size is 11.0Mb
sub-directories of 1Mb or more:
data 3.0Mb
libs 7.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64