Last updated on 2025-06-08 02:49:26 CEST.
| Package | FAIL | NOTE | OK |
|---|---|---|---|
| douconca | 13 | ||
| factReg | 13 | ||
| isatabr | 13 | ||
| LMMsolver | 13 | ||
| statgenGWAS | 1 | 3 | 9 |
| statgenGxE | 3 | 10 | |
| statgenHTP | 3 | 10 | |
| statgenIBD | 4 | 9 | |
| statgenMPP | 13 | ||
| statgenQTLxT | 8 | 5 | |
| statgenSTA | 5 | 8 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: FAIL: 1, NOTE: 3, OK: 9
Version: 1.0.11
Check: PDF version of manual
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
+ return(trial)
+ })
>
> ## Create gData object.
> gDataDrops <- createGData(geno = dropsMarkers, map = dropsMap,
+ pheno = dropsPhenoList)
>
> ## Run single trait GWAS for trait 'grain.yield' for trial Mur13W.
>
> ## Run single trait GWAS for trait 'grain.yield' for trial Mur13W.
> ## Use chromosome specific kinship matrices calculated using vanRaden method.
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 3.37 0.66 4.04 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 1.0.11
Check: installed package size
Result: NOTE
installed size is 9.7Mb
sub-directories of 1Mb or more:
data 3.6Mb
libs 5.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 1.0.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘asreml’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 1.0.8
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘asreml’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.8
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
data 3.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 1.0.8
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘statgenGWAS’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.8
Check: installed package size
Result: NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
extdata 2.4Mb
libs 4.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 8, OK: 5
Version: 1.0.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
runMultiTraitGwas.Rd: GWAS
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.0.2
Check: installed package size
Result: NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
libs 6.4Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.14
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘mapproj’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.14
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘asreml’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64