CRAN Package Check Results for Package cancerradarr

Last updated on 2025-10-30 02:48:58 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.3.1	8.97	331.08	340.05	OK
r-devel-linux-x86_64-debian-gcc	2.0.0	5.69	299.73	305.42	ERROR
r-devel-linux-x86_64-fedora-clang	2.0.0	28.00	714.83	742.83	OK
r-devel-linux-x86_64-fedora-gcc	2.0.0	23.00	717.73	740.73	OK
r-devel-windows-x86_64	1.3.1	10.00	396.00	406.00	OK
r-patched-linux-x86_64	2.0.0	8.86	430.52	439.38	ERROR
r-release-linux-x86_64	1.3.1	7.91	310.23	318.14	OK
r-release-macos-arm64	2.0.0	4.00	177.00	181.00	OK
r-release-macos-x86_64	2.0.0	15.00	697.00	712.00	OK
r-release-windows-x86_64	2.0.0	14.00	504.00	518.00	OK
r-oldrel-macos-arm64	2.0.0	4.00	180.00	184.00	NOTE
r-oldrel-macos-x86_64	2.0.0	15.00	698.00	713.00	NOTE
r-oldrel-windows-x86_64	1.3.1	15.00	475.00	490.00	OK

Check Details

Version: 2.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [248s/318s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(cancerradarr) > > test_check("cancerradarr") processing file: static_report.Rmd > input_file_test.xlsx has been created, please fill it with cancer registry data > Reading /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cancerradarr/extdata/ex_cancerRADAR_input_filled.xlsx > Reference population aggregation > Aggregation level: un_region - Data aggregation.. custom aggregation ===>--------------------------- 10% | ETA: 21s custom aggregation =======>----------------------- 23% | ETA: 19s custom aggregation =============>----------------- 45% | ETA: 10s custom aggregation =================>------------- 55% | ETA: 9s custom aggregation ===================>----------- 62% | ETA: 9s custom aggregation ========================>------ 79% | ETA: 5s custom aggregation ========================>------ 80% | ETA: 5s custom aggregation ==========================>---- 88% | ETA: 3s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: un_subregion - Data aggregation.. custom aggregation ==>---------------------------- 6% | ETA: 20s custom aggregation ==>---------------------------- 7% | ETA: 1m custom aggregation ===>--------------------------- 10% | ETA: 1m custom aggregation ====>-------------------------- 14% | ETA: 1m custom aggregation =====>------------------------- 17% | ETA: 1m custom aggregation ======>------------------------ 20% | ETA: 1m custom aggregation =======>----------------------- 24% | ETA: 1m custom aggregation ========>---------------------- 27% | ETA: 1m custom aggregation =========>--------------------- 30% | ETA: 1m custom aggregation ==========>-------------------- 33% | ETA: 1m custom aggregation =============>----------------- 42% | ETA: 42s custom aggregation ==============>---------------- 47% | ETA: 39s custom aggregation ===============>--------------- 49% | ETA: 39s custom aggregation ================>-------------- 52% | ETA: 38s custom aggregation ================>-------------- 54% | ETA: 37s custom aggregation =================>------------- 57% | ETA: 35s custom aggregation ===================>----------- 63% | ETA: 28s custom aggregation ====================>---------- 68% | ETA: 25s custom aggregation =====================>--------- 71% | ETA: 22s custom aggregation ======================>-------- 74% | ETA: 20s custom aggregation =======================>------- 77% | ETA: 18s custom aggregation ========================>------ 80% | ETA: 16s custom aggregation =========================>----- 83% | ETA: 14s custom aggregation ==========================>---- 88% | ETA: 10s custom aggregation ============================>-- 93% | ETA: 5s custom aggregation =============================>- 97% | ETA: 2s custom aggregation ==============================> 99% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: hdi_cat - Data aggregation.. custom aggregation =====>------------------------- 18% | ETA: 11s custom aggregation ========>---------------------- 25% | ETA: 17s custom aggregation ==============>---------------- 46% | ETA: 10s custom aggregation ==================>------------ 60% | ETA: 8s custom aggregation ====================>---------- 68% | ETA: 7s custom aggregation ========================>------ 80% | ETA: 4s custom aggregation ============================>-- 92% | ETA: 2s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: any_migr - Data aggregation.. custom aggregation =========================>----- 83% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: asr_rank_cat - Data aggregation.. custom aggregation ===>--------------------------- 11% | ETA: 21s custom aggregation =======>----------------------- 23% | ETA: 20s custom aggregation ==========>-------------------- 33% | ETA: 18s custom aggregation ==============>---------------- 46% | ETA: 13s custom aggregation =================>------------- 57% | ETA: 11s custom aggregation =============================>- 96% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > /tmp/RtmpNhN5SX/filed9bb498f815.xlsx created! processing file: static_report.Rmd [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-create_static_report.R:35:5'): create_static_report works with example output file ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─cancerradarr::create_static_report(temp_file) at test-create_static_report.R:35:5 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test_cancerradarr.R:38:3'): Output file creation ──────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─cancerradarr::create_static_report(file.out) at test_cancerradarr.R:38:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [365s/423s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(cancerradarr) > > test_check("cancerradarr") processing file: static_report.Rmd > input_file_test.xlsx has been created, please fill it with cancer registry data > Reading /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cancerradarr/extdata/ex_cancerRADAR_input_filled.xlsx > Reference population aggregation custom aggregation ==========>-------------------- 33% | ETA: 5s > Aggregation level: un_region - Data aggregation.. custom aggregation =>----------------------------- 4% | ETA: 1m custom aggregation ===>--------------------------- 10% | ETA: 46s custom aggregation =====>------------------------- 17% | ETA: 42s custom aggregation =======>----------------------- 23% | ETA: 38s custom aggregation ============>------------------ 42% | ETA: 20s custom aggregation ===============>--------------- 50% | ETA: 17s custom aggregation =================>------------- 57% | ETA: 15s custom aggregation =======================>------- 76% | ETA: 7s custom aggregation ========================>------ 79% | ETA: 7s custom aggregation ========================>------ 80% | ETA: 7s custom aggregation ==========================>---- 88% | ETA: 5s custom aggregation ============================>-- 95% | ETA: 2s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: un_subregion - Data aggregation.. custom aggregation ==>---------------------------- 7% | ETA: 1m custom aggregation ==>---------------------------- 7% | ETA: 2m custom aggregation ===>--------------------------- 9% | ETA: 2m custom aggregation ===>--------------------------- 10% | ETA: 2m custom aggregation ====>-------------------------- 13% | ETA: 2m custom aggregation ====>-------------------------- 15% | ETA: 2m custom aggregation ======>------------------------ 18% | ETA: 2m custom aggregation ======>------------------------ 21% | ETA: 2m custom aggregation ========>---------------------- 25% | ETA: 1m custom aggregation ========>---------------------- 28% | ETA: 1m custom aggregation =========>--------------------- 30% | ETA: 1m custom aggregation ==========>-------------------- 33% | ETA: 1m custom aggregation ==============>---------------- 46% | ETA: 1m custom aggregation ==============>---------------- 48% | ETA: 50s custom aggregation ================>-------------- 52% | ETA: 48s custom aggregation ================>-------------- 52% | ETA: 48s custom aggregation ================>-------------- 54% | ETA: 47s custom aggregation =================>------------- 56% | ETA: 45s custom aggregation =================>------------- 58% | ETA: 44s custom aggregation ==================>------------ 61% | ETA: 41s custom aggregation ====================>---------- 66% | ETA: 34s custom aggregation ====================>---------- 68% | ETA: 33s custom aggregation =====================>--------- 71% | ETA: 30s custom aggregation ======================>-------- 73% | ETA: 28s custom aggregation =======================>------- 76% | ETA: 25s custom aggregation ========================>------ 79% | ETA: 22s custom aggregation =========================>----- 82% | ETA: 19s custom aggregation ==========================>---- 86% | ETA: 15s custom aggregation ============================>-- 93% | ETA: 7s custom aggregation =============================>- 97% | ETA: 3s custom aggregation ==============================> 99% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: hdi_cat - Data aggregation.. custom aggregation =====>------------------------- 18% | ETA: 19s custom aggregation =======>----------------------- 24% | ETA: 21s custom aggregation =========>--------------------- 29% | ETA: 23s custom aggregation ===============>--------------- 49% | ETA: 13s custom aggregation ==================>------------ 60% | ETA: 10s custom aggregation ====================>---------- 68% | ETA: 9s custom aggregation =======================>------- 77% | ETA: 6s custom aggregation =========================>----- 85% | ETA: 4s custom aggregation ============================>-- 92% | ETA: 2s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: any_migr - Data aggregation.. custom aggregation =====================>--------- 71% | ETA: 1s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > Aggregation level: asr_rank_cat - Data aggregation.. custom aggregation ===>--------------------------- 11% | ETA: 29s custom aggregation ======>------------------------ 20% | ETA: 25s custom aggregation =========>--------------------- 31% | ETA: 22s custom aggregation ============>------------------ 42% | ETA: 17s custom aggregation ===============>--------------- 51% | ETA: 15s custom aggregation ====================>---------- 67% | ETA: 9s - Incidence rates (ir).. - Proportional rates (pr).. - Crude incidence rates (cir).. - Age-standardized incidence rate (asir).. - Crude incidence rates ratio (cirr).. - Age-standardized incidence rates ratio (asirr).. - Crude incidence rates difference (cird).. - Age-standardized incidence rates difference (asird).. - Indirect standardized incidence ratio (sir).. - Proportional incidence ratio (pir).. - Total number of cancer.. > /home/hornik/tmp/scratch/RtmpIE42nZ/file17a69647087d84.xlsx created! processing file: static_report.Rmd [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-create_static_report.R:35:5'): create_static_report works with example output file ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─cancerradarr::create_static_report(temp_file) at test-create_static_report.R:35:5 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test_cancerradarr.R:38:3'): Output file creation ──────────────────── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─cancerradarr::create_static_report(file.out) at test_cancerradarr.R:38:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 2 | WARN 2 | SKIP 0 | PASS 263 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 2.0.0
Check: installed package size
Result: NOTE installed size is 7.7Mb sub-directories of 1Mb or more: extdata 7.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64