Provides functionality for constructing statistical models of transcriptomic dynamics in field conditions. It further offers the function to predict expression of a gene given the attributes of samples and meteorological data. Nagano, A. J., Sato, Y., Mihara, M., Antonio, B. A., Motoyama, R., Itoh, H., Naganuma, Y., and Izawa, T. (2012). <doi:10.1016/j.cell.2012.10.048>. Iwayama, K., Aisaka, Y., Kutsuna, N., and Nagano, A. J. (2017). <doi:10.1093/bioinformatics/btx049>.
| Version: | 0.0.6 |
| Depends: | R (≥ 3.2.2) |
| Imports: | methods, Rcpp (≥ 0.11.2), XML, gglasso (≥ 1.4), MASS |
| LinkingTo: | Rcpp, RcppEigen (≥ 0.3.2.1.2) |
| Suggests: | knitr, rmarkdown |
| Published: | 2019-01-07 |
| DOI: | 10.32614/CRAN.package.FIT |
| Author: | Koji Iwayama [cre], Yuri Aisaka [aut] |
| Maintainer: | Koji Iwayama <fieldtranscriptome at gmail.com> |
| License: | MPL (≥ 2) | file LICENSE |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| CRAN checks: | FIT results |
| Reference manual: | FIT.html , FIT.pdf |
| Vignettes: |
FIT (source, R code) |
| Package source: | FIT_0.0.6.tar.gz |
| Windows binaries: | r-devel: FIT_0.0.6.zip, r-release: FIT_0.0.6.zip, r-oldrel: FIT_0.0.6.zip |
| macOS binaries: | r-release (arm64): FIT_0.0.6.tgz, r-oldrel (arm64): FIT_0.0.6.tgz, r-release (x86_64): FIT_0.0.6.tgz, r-oldrel (x86_64): FIT_0.0.6.tgz |
| Old sources: | FIT archive |
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