GRIN2: Genomic Random Interval (GRIN)
Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <doi:10.1093/bioinformatics/btt372>.
| Version: | 2.0.0 |
| Depends: | R (≥ 4.2.0) |
| Imports: | circlize, data.table, dplyr, forcats, ggplot2, graphics, grDevices, grid, magrittr, stats, stringr, survival, tibble, tidyselect, utils, writexl |
| Suggests: | knitr, rmarkdown, biomaRt, gridGraphics, Gviz, ensembldb, GenomeInfoDb, ComplexHeatmap |
| Published: | 2025-06-17 |
| DOI: | 10.32614/CRAN.package.GRIN2 |
| Author: | Abdelrahman Elsayed
 [aut, cre,
cph],
Xueyuan Cao [aut],
Lakshmi Anuhya patibandla [aut],
Stanley Pounds [aut, cph] |
| Maintainer: | Abdelrahman Elsayed <aelsayed at stjude.org> |
| BugReports: | https://github.com/abdel-elsayed87/GRIN2/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/abdel-elsayed87/GRIN2 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | GRIN2 results |
Documentation:
| Reference manual: | GRIN2.pdf |
| Vignettes: |
Introduction to the GRIN2 Package (source, R code) |
Downloads:
| Package source: | GRIN2_2.0.0.tar.gz |
| Windows binaries: | r-devel: GRIN2_2.0.0.zip, r-release: GRIN2_2.0.0.zip, r-oldrel: GRIN2_2.0.0.zip |
| macOS binaries: | r-release (arm64): GRIN2_2.0.0.tgz, r-oldrel (arm64): GRIN2_2.0.0.tgz, r-release (x86_64): GRIN2_2.0.0.tgz, r-oldrel (x86_64): GRIN2_2.0.0.tgz |
| Old sources: | GRIN2 archive |
Linking:
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