Type: | Package |
Title: | Multivariate Profile Analysis |
Version: | 0.1.5 |
Date: | 2024-03-11 |
BugReports: | https://github.com/bwiernik/configural/issues |
Description: | R functions for criterion profile analysis, Davison and Davenport (2002) <doi:10.1037/1082-989X.7.4.468> and meta-analytic criterion profile analysis, Wiernik, Wilmot, Davison, and Ones (2020) <doi:10.1037/met0000305>. Sensitivity analyses to aid in interpreting criterion profile analysis results are also included. |
License: | GPL (≥ 3) |
Depends: | R (≥ 3.4.0) |
Encoding: | UTF-8 |
LazyData: | true |
Imports: | stats |
Suggests: | crayon |
RoxygenNote: | 7.3.1.9000 |
NeedsCompilation: | no |
Packaged: | 2024-03-18 17:16:43 UTC; brentonw |
Author: | Brenton M. Wiernik [aut, cre] |
Maintainer: | Brenton M. Wiernik <brenton@wiernik.org> |
Repository: | CRAN |
Date/Publication: | 2024-03-18 17:40:02 UTC |
configural: An R package for profile analysis
Description
Overview of the configural package.
Details
The configural package provides tools for conducting configural and profile analyses. It currently supports criterion profile analysis (Davison & Davenport, 2002) and meta-analytic criterion profile analysis (Wiernik et al., 2019). Functions are provided to calculate criterion patterns and CPA variance decomposition, as well as for computing confidence intervals, shrinkage corrections, and fungible patterns.
Author(s)
Maintainer: Brenton M. Wiernik brenton@wiernik.org
See Also
Useful links:
Report bugs at https://github.com/bwiernik/configural/issues
Quadratic form matrix product
Description
Calculate the quadratic form
Q=x^{\prime}Ax
Usage
A %&% x
Arguments
A |
A square matrix |
x |
A vector or matrix |
Value
The quadratic product
Examples
diag(5) %&% 1:5
Locate extrema of fungible OLS regression weights
Description
Locate extrema of fungible OLS regression weights
Usage
.fungible_extrema(
theta,
Rxx,
rxy,
Nstarts = 1000,
MaxMin = c("min", "max"),
silent = FALSE
)
Arguments
theta |
The value of the R-squared decrement used to generate a family of fungible coefficients. |
Rxx |
An intercorrelation matrix among the predictor variables |
rxy |
A vector of predictor–criterion correlations |
Nstarts |
The maximum number |
MaxMin |
Should the cosine between the OLS and alternative weights be maximized ("max") to find the maximally similar coefficients or minimized ("min") to find the maximally dissimilar coefficients? |
silent |
Should current optimization values be printed to the console ( |
Value
A list containing the alternative weights and other fungible weights estimation parameters
Author(s)
Adapted from fungible::fungibleExtrema()
by Niels Waller and Jeff Jones
Adjust a regression model R-squared for overfitting
Description
Estimate shrinkage for regression models
Usage
adjust_Rsq(Rsq, n, p, adjust = c("fisher", "pop", "cv"))
Arguments
Rsq |
Observed model R-squared |
n |
Sample size |
p |
Number of predictors |
adjust |
Which adjustment to apply. Options are "fisher" for the Adjusted R-squared method used in |
Value
An adjusted R-squared value.
References
Shieh, G. (2008). Improved shrinkage estimation of squared multiple correlation coefficient and squared cross-validity coefficient. Organizational Research Methods, 11(2), 387–407. doi:10.1177/1094428106292901
Examples
adjust_Rsq(.55, 100, 6, adjust = "pop")
Make a matrix symmetric by averaging with its transpose
Description
Makes a matrix symmetric by averaging the elements of the matrix and its
transpose. When This function fills in NA
elements of a matrix with the corresponding
value from the matrix transpose, if available
Usage
complete_matrix(m, na.rm = TRUE)
Arguments
m |
Numeric matrix to complete. |
na.rm |
Logical. Should missing values be dropped? (default: |
Value
A completed matrix.
Examples
predictors <- c('auto', 'skill_var', 'task_var', 'task_sig', 'task_id',
'fb_job', 'job_comp', 'interdep', 'fb_others', 'soc_support')
m <- jobchar$sevar_r[c('perform', predictors), c('perform', predictors)]
complete_matrix(m)
Calculate the asymptotic sampling covariance matrix for the unique elements of a correlation matrix
Description
Calculate the asymptotic sampling covariance matrix for the unique elements of a correlation matrix
Usage
cor_covariance(r, n)
Arguments
r |
A correlation matrix |
n |
The sample size |
Value
The asymptotic sampling covariance matrix
Author(s)
Based on an internal function from the fungible package by Niels Waller
References
Nel, D. G. (1985). A matrix derivation of the asymptotic covariance matrix of sample correlation coefficients. Linear Algebra and Its Applications, 67, 137–145. doi:10.1016/0024-3795(85)90191-0
Examples
cor_covariance(matrix(c(1, .2, .3, .2, 1, .3, .3, .3, 1), ncol = 3), 100)
Estimate the asymptotic sampling covariance matrix for the unique elements of a meta-analytic correlation matrix
Description
Estimate the asymptotic sampling covariance matrix for the unique elements of a meta-analytic correlation matrix
Usage
cor_covariance_meta(
r,
n,
sevar,
source = NULL,
rho = NULL,
sevar_rho = NULL,
n_overlap = NULL
)
Arguments
r |
A meta-analytic matrix of observed correlations (can be full or lower-triangular). |
n |
A matrix of total sample sizes for the meta-analytic correlations in |
sevar |
A matrix of estimated sampling error variances for the meta-analytic correlations in |
source |
A matrix indicating the sources of the meta-analytic correlations in |
rho |
A meta-analytic matrix of corrected correlations (can be full or lower-triangular). |
sevar_rho |
A matrix of estimated sampling error variances for the meta-analytic corrected correlations in |
n_overlap |
A matrix indicating the overlapping sample size for the unique (lower triangular) values in |
Details
If both source
and n_overlap
are NULL
, it is assumed that all meta-analytic correlations come from the the same source.
Value
The estimated asymptotic sampling covariance matrix
References
Nel, D. G. (1985). A matrix derivation of the asymptotic covariance matrix of sample correlation coefficients. Linear Algebra and Its Applications, 67, 137–145. doi:10.1016/0024-3795(85)90191-0
Wiernik, B. M. (2018). Accounting for dependency in meta-analytic structural equations modeling: A flexible alternative to generalized least squares and two-stage structural equations modeling. Unpublished manuscript.
Examples
cor_covariance_meta(r = mindfulness$r, n = mindfulness$n,
sevar = mindfulness$sevar_r, source = mindfulness$source)
Generate labels for correlations from a vector of variable names
Description
This function returns a vector of labels for the unique correlations between pairs of variables from a supplied vector of variable names
Usage
cor_labels(var_names)
Arguments
var_names |
A character vector of variable names |
Value
A vector of correlation labels
Examples
cor_labels(colnames(mindfulness$r))
Conduct criterion profile analysis using a correlation matrix
Description
Conduct criterion profile analysis using a correlation matrix
Usage
cpa_mat(
formula,
cov_mat,
n = NULL,
se_var_mat = NULL,
se_beta_method = c("normal", "lm"),
adjust = c("fisher", "pop", "cv"),
conf_level = 0.95,
...
)
Arguments
formula |
Regression formula with a single outcome variable on the left-hand side and one or more predictor variables on the right-hand side (e.g., Y ~ X1 + X2). |
cov_mat |
Correlation matrix containing the variables to be used in the regression. |
n |
Sample size. Used to compute adjusted R-squared and, if |
se_var_mat |
Optional. The sampling error covariance matrix among the unique elements of |
se_beta_method |
Method to use to estimate the standard errors of standardized regression (beta) coefficients. Current options include "normal" (use the Jones-Waller, 2015, normal-theory approach) and "lm" (estimate standard errors using conventional regression formulas). |
adjust |
Method to adjust R-squared for overfitting. See |
conf_level |
Confidence level to use for confidence intervals. |
... |
Additional arguments. |
Value
An object of class "cpa" containing the criterion pattern vector and CPA variance decomposition
References
Jones, J. A., & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF) covariance matrix of standardized regression coefficients: Theoretical extensions and finite sample behavior. Psychometrika, 80(2), 365–378. doi:10.1007/s11336-013-9380-y
Revelle, W., Condon, D. M., Wilt, J., French, J. A., Brown, A., & Elleman, L. G. (2017). Web- and phone-based data collection using planned missing designs. In N. G. Fielding, R. M. Lee, & G. Blank, The SAGE Handbook of Online Research Methods (pp. 578–594). SAGE Publications. doi:10.4135/9781473957992.n33
Wiernik, B. M., Wilmot, M. P., Davison, M. L., & Ones, D. S. (2019). Meta-analytic criterion profile analysis. Psychological Methods doi:10.1037/met0000305
Examples
sevar <- cor_covariance_meta(mindfulness$r, mindfulness$n, mindfulness$sevar_r, mindfulness$source)
cpa_mat(mindfulness ~ ES + A + C + Ex + O,
cov_mat = mindfulness$r,
n = NULL,
se_var_mat = sevar,
adjust = "pop")
Compute CPA level and pattern scores for a set of data
Description
Compute CPA level and pattern scores for a set of data
Usage
cpa_scores(
cpa_mod,
newdata = NULL,
augment = TRUE,
cpa_names = c("cpa_lev", "cpa_pat"),
scale = FALSE,
scale_center = TRUE,
scale_scale = TRUE
)
Arguments
cpa_mod |
A model returned from |
newdata |
A data frame or matrix containing columns with the same names as
the predictors in |
augment |
Should be CPA score columns be added to |
cpa_names |
Character vector of length 2 giving the variable names to assign to the CPA score columns. |
scale |
Logical. Should the variables in |
scale_center |
If |
scale_scale |
If |
Value
A data frame containing the CPA score variables.
Examples
sevar <- cor_covariance_meta(mindfulness$r, mindfulness$n, mindfulness$sevar_r, mindfulness$source)
cpa_mod <- cpa_mat(mindfulness ~ ES + A + C + Ex + O,
cov_mat = mindfulness$r,
n = NULL,
se_var_mat = sevar,
adjust = "pop")
newdata <- data.frame(ES = c(4.2, 3.2, 3.4, 4.2, 3.8, 4.0, 5.6, 2.8, 3.4, 2.8),
A = c(4.0, 4.2, 3.8, 4.6, 4.0, 4.6, 4.6, 2.6, 3.6, 5.4),
C = c(2.8, 4.0, 4.0, 3.0, 4.4, 5.6, 4.4, 3.4, 4.0, 5.6),
Ex = c(3.8, 5.0, 4.2, 3.6, 4.8, 5.6, 4.2, 2.4, 3.4, 4.8),
O = c(3.0, 4.0, 4.8, 3.2, 3.6, 5.0, 5.4, 4.2, 5.0, 5.2)
)
newdata_cpa <- cpa_scores(cpa_mod, newdata, augment = FALSE)
newdata_augment <- cpa_scores(cpa_mod, newdata, augment = TRUE)
Meta-analytic correlations among Big Five personality traits and psychological disorders
Description
Big Five intercorrelations from Davies et al. (2015). Big Five–psychological disorder correlations from Kotov et al. (2010). Note that there were several duplicate or missing values in the reported data table in the published article. These results are based on corrected data values.
Usage
data(disorders)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
References
Davies, S. E., Connelly, B. L., Ones, D. S., & Birkland, A. S. (2015). The general factor of personality: The “Big One,” a self-evaluative trait, or a methodological gnat that won’t go away? Personality and Individual Differences, 81, 13–22. doi:10.1016/j.paid.2015.01.006
Kotov, R., Gamez, W., Schmidt, F., & Watson, D. (2010). Linking “big” personality traits to anxiety, depressive, and substance use disorders: A meta-analysis. Psychological Bulletin, 136(5), 768–821. doi:10.1037/a0020327
Examples
data(disorders)
Locate extrema of fungible weights for regression and related models
Description
Generates fungible regression weights (Waller, 2008) and related results using the method by Waller and Jones (2010).
Usage
fungible(
object,
theta = 0.005,
Nstarts = 1000,
MaxMin = c("min", "max"),
silent = FALSE,
...
)
Arguments
object |
A fitted model object. Currently supported classes are: "cpa" |
theta |
A vector of values to decrement from R-squared to compute families of fungible coefficients. |
Nstarts |
Maximum number of (max) minimizations from random starting configurations. |
MaxMin |
Should the cosine between the observed and alternative weights be maximized ("max") to find the maximally similar coefficients or minimized ("min") to find the maximally dissimilar coefficients? |
silent |
Should current optimization values be printed to the console ( |
... |
Additional arguments |
Value
A list containing the alternative weights and other fungible weights estimation parameters
Author(s)
Niels Waller, Jeff Jones, Brenton M. Wiernik. Adapted from fungible::fungibleExtrema()
.
References
Waller, N. G. (2008). Fungible weights in multiple regression. Psychometrika, 73(4), 691–703. doi:10.1007/s11336-008-9066-z
Waller, N. G., & Jones, J. A. (2009). Locating the extrema of fungible regression weights. Psychometrika, 74(4), 589–602. doi:10.1007/s11336-008-9087-7
Examples
mind <- cpa_mat(mindfulness ~ ES + A + C + Ex + O,
cov_mat = mindfulness$r,
n = harmonic_mean(vechs(mindfulness$n)),
se_var_mat = cor_covariance_meta(mindfulness$r,
mindfulness$n,
mindfulness$sevar_r,
mindfulness$source),
adjust = "pop")
mind_fung <- fungible(mind, Nstarts = 100)
Locate extrema of fungible criterion profile patterns
Description
Identify maximally similar or dissimilar criterion patterns in criterion profile analysis
Usage
## S3 method for class 'cpa'
fungible(
object,
theta = 0.005,
Nstarts = 1000,
MaxMin = c("min", "max"),
silent = FALSE,
...
)
Arguments
object |
A fitted model object of class "cpa". |
theta |
A vector of values to decrement from R-squared to compute families of fungible coefficients. |
Nstarts |
Maximum number of (max) minimizations from random starting configurations. |
MaxMin |
Should the cosine between the observed and alternative weights be maximized ("max") to find the maximally similar coefficients or minimized ("min") to find the maximally dissimilar coefficients? |
silent |
Should current optimization values be printed to the console ( |
... |
Additional arguments |
Value
A list containing the alternative weights and other fungible weights estimation parameters
References
Wiernik, B. M., Wilmot, M. P., Davison, M. L., & Ones, D. S. (2020). Meta-analytic criterion profile analysis. Psychological Methods. doi:10.1037/met0000305
Examples
mind <- cpa_mat(mindfulness ~ ES + A + C + Ex + O,
cov_mat = mindfulness$r,
n = harmonic_mean(vechs(mindfulness$n)),
se_var_mat = cor_covariance_meta(mindfulness$r,
mindfulness$n,
mindfulness$sevar_r,
mindfulness$source),
adjust = "pop")
mind_fung <- fungible(mind, Nstarts = 100)
Locate extrema of fungible OLS regression weights
Description
Identify maximally similar or dissimilar sets of fungible standardized regression coefficients from an OLS regression model
Usage
## S3 method for class 'lm'
fungible(
object,
theta = 0.005,
Nstarts = 1000,
MaxMin = c("min", "max"),
silent = FALSE,
...
)
Arguments
object |
A fitted model object of class "lm" or "summary.lm". |
theta |
A vector of values to decrement from R-squared to compute families of fungible coefficients. |
Nstarts |
Maximum number of (max) minimizations from random starting configurations. |
MaxMin |
Should the cosine between the observed and alternative weights be maximized ("max") to find the maximally similar coefficients or minimized ("min") to find the maximally dissimilar coefficients? |
silent |
Should current optimization values be printed to the console ( |
... |
Additional arguments |
Value
A list containing the alternative weights and other fungible weights estimation parameters
References
Waller, N. G., & Jones, J. A. (2009). Locating the extrema of fungible regression weights. Psychometrika, 74(4), 589–602. doi:10.1007/s11336-008-9087-7
Examples
lm_mtcars <- lm(mpg ~ cyl + disp + hp + drat + wt + qsec + vs + am + gear + carb,
data = mtcars)
lm_mtcars_fung <- fungible(lm_mtcars, Nstarts = 100)
Meta-analytic correlations of Graduate Record Examination subtests with graduate grade point average
Description
Correlations between GRE subtests and graduate student GPA from Kuncel et al. (2001).
Usage
data(gre)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
Details
GRE–GPA correlations in rho
are corrected for direct range restriction on
the GRE and unreliability in GPA. Subtest intercorrelations in rho
are
observed correlations computed among applicant norm samples. These values are
also used in r
. Due to compensatory selection on GRE scores, these values
will not accurately reflect subtest intercorrelations in selected-student
(range-restricted) samples. sevar_rho
andsevar_r
for GRE subtest
intercorrelations are computed with an assumed
SDρ = .02.
References
Kuncel, N. R., Hezlett, S. A., & Ones, D. S. (2001). A comprehensive meta-analysis of the predictive validity of the graduate record examinations: Implications for graduate student selection and performance. Psychological Bulletin, 127(1), 162–181. doi:10.1037/0033-2909.127.1.162
Examples
data(gre)
Find the harmonic mean of a vector, matrix, or columns of a data.frame
Description
The harmonic mean is merely the reciprocal of the arithmetic mean of the reciprocals.
Usage
harmonic_mean(x, na.rm = TRUE, zero = TRUE)
Arguments
x |
A vector, matrix, or data.frame |
na.rm |
Logical. If |
zero |
Logical, If |
Value
The harmonic mean of x
Author(s)
Adapted from psych::harmonic.mean()
by William Revelle
Examples
harmonic_mean(1:10)
Meta-analytic correlations of HRM practices with organizational financial performance
Description
Human resource management practice–organizational financial performance correlations from Combs et al. (2006). Intercorrelations among HRM practices from Guest et al. (2004).
Usage
data(hrm)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
References
Combs, J., Liu, Y., Hall, A., & Ketchen, D. (2006). How much do high-performance work practices matter? A meta-analysis of their effects on organizational performance. Personnel Psychology, 59(3), 501–528. doi:10.1111/j.1744-6570.2006.00045.x
Guest, D., Conway, N., & Dewe, P. (2004). Using sequential tree analysis to search for ‘bundles’ of HR practices. Human Resource Management Journal, 14(1), 79–96. doi:10.1111/j.1748-8583.2004.tb00113.x
Examples
data(hrm)
Meta-analytic correlations of job characteristics with performance and satisfaction
Description
Self-rated job characteristics intercorrelations and correlations with other-rated job performance and self-rated job satisfaction from Humphrey et al. (2007).
Usage
data(jobchar)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
References
Humphrey, S. E., Nahrgang, J. D., & Morgeson, F. P. (2007). Integrating motivational, social, and contextual work design features: A meta-analytic summary and theoretical extension of the work design literature. Journal of Applied Psychology, 92(5), 1332–1356. doi:10.1037/0021-9010.92.5.1332
Examples
data(jobchar)
predictors <- c('auto', 'skill_var', 'task_var', 'task_sig', 'task_id',
'fb_job', 'job_comp', 'interdep', 'fb_others', 'soc_support')
sevar_jobchar_perf <-
cor_covariance_meta(
r = jobchar$r[c('perform', predictors), c('perform', predictors)],
n = jobchar$n[c('perform', predictors), c('perform', predictors)],
sevar = jobchar$sevar_r[c('perform', predictors), c('perform', predictors)],
rho = jobchar$rho[c('perform', predictors), c('perform', predictors)],
sevar_rho = jobchar$sevar_rho[c('perform', predictors),
c('perform', predictors)],
source = jobchar$source[c('perform', predictors), c('perform', predictors)])
cpa_jobchar_perf <- cpa_mat(perform ~ auto + skill_var + task_var + task_sig +
task_id + fb_job + job_comp +
interdep + fb_others + soc_support,
cov_mat = jobchar$rho,
n = harmonic_mean(as.vector(jobchar$n[c('perform', predictors),
c('perform', predictors)])),
se_var_mat = sevar_jobchar_perf,
adjust = "pop", conf_level = .95)
Meta-analytic correlations among Big Five personality traits and trait mindfulness
Description
Big Five intercorrelations from Davies et al. (2015). Big Five–Mindfulness correlations from Hanley and Garland (2017). Coefficient alpha for mindfulness measures taken from Giluk (2009).
Usage
data(mindfulness)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
References
Davies, S. E., Connelly, B. L., Ones, D. S., & Birkland, A. S. (2015). The general factor of personality: The “Big One,” a self-evaluative trait, or a methodological gnat that won’t go away? Personality and Individual Differences, 81, 13–22. doi:10.1016/j.paid.2015.01.006
Giluk, T. L. (2009). Mindfulness, Big Five personality, and affect: A meta-analysis. Personality and Individual Differences, 47(8), 805–811. doi:10.1016/j.paid.2009.06.026
Hanley, A. W., & Garland, E. L. (2017). The mindful personality: A meta-analysis from a cybernetic perspective. Mindfulness, 8(6), 1456–1470. doi:10.1007/s12671-017-0736-8
Examples
data(mindfulness)
Effective sample size
Description
Estimate an effective sample size for a statistic given the observed statistic and the estimated sampling error variance (cf. Revelle et al., 2017).
Usage
n_effective_R2(R2, var_R2, p)
Arguments
R2 |
Observed R^2^ value |
var_R2 |
Estimated sampling error variance for R^2^ |
p |
Number of predictors in the regression model |
Details
n_effective_R2
estimates the effective sample size for the R^2^ value from
an OLS regression model, using the sampling error variance formula from Cohen
et al. (2003).
Value
An effective sample size.
References
Revelle, W., Condon, D. M., Wilt, J., French, J. A., Brown, A., & Elleman, L. G. (2017). Web- and phone-based data collection using planned missing designs. In N. G. Fielding, R. M. Lee, & G. Blank, The SAGE Handbook of Online Research Methods (pp. 578–594). SAGE Publications. doi:10.4135/9781473957992.n33
Cohen, J., Cohen, P., West, S. G., & Aiken, L. S. (2003). Applied multiple regression/correlation analysis for the behavioral sciences (3rd ed.). Routledge. doi:10.4324/9780203774441
Examples
n_effective_R2(0.3953882, 0.0005397923, 5)
Correlations between study design moderators and effect sizes for prejudice reduction following intergroup contact
Description
Correlations among study design moderators and study design moderator–observed prejudice reduction effect sizes from Pettigrew and Tropp (2008). Note that correlations with effect size have been reverse-coded so that a positive correlation indicates that a higher level of the moderator is associated with larger prejudice reduction.
Usage
data(prejudice)
Format
list with entries r
(observed correlations among moderators) and
k
(number of samples in meta-analysis)
References
Pettigrew, T. F., & Tropp, L. R. (2006). A meta-analytic test of intergroup contact theory. Journal of Personality and Social Psychology, 90(5), 751–783. doi:10.1037/0022-3514.90.5.751
Examples
data(prejudice)
Meta-analytic correlations among team processes and team effectiveness
Description
Team process intercorrelations and team process–team performance/affect correlations from LePine et al. (2008).
Usage
data(team)
Format
list with entries r
(mean observed correlations), rho
(mean
corrected correlations), n
(sample sizes), sevar_r
(sampling error
variances for mean observed correlations), sevar_rho
(sampling error
variances for mean corrected correlations), and source
(character labels
indicating which meta-analytic correlations came from the same source)
Details
Note that LePine et al. (2008) did not report confidence intervals, sampling error variances, or heterogeneity estimates for correlations among team processes; included sampling error variances in this list are based on total sample size only and do not include uncertainty stemming from any effect size heterogeneity.
References
LePine, J. A., Piccolo, R. F., Jackson, C. L., Mathieu, J. E., & Saul, J. R. (2008). A meta-analysis of teamwork processes: tests of a multidimensional model and relationships with team effectiveness criteria. Personnel Psychology, 61(2), 273–307. doi:10.1111/j.1744-6570.2008.00114.x
Examples
data(team)
Calculate a transition matrix for a symmetric matrix
Description
The transition matrix extracts the lower triangular elements from a vectorized symmetric matrix (Nel, 1985).
Usage
transition(p)
Arguments
p |
The number of columns in a matrix |
Author(s)
Based on internal functions from the fungible package by Niels Waller
References
Nel, D. G. (1985). A matrix derivation of the asymptotic covariance matrix of sample correlation coefficients. Linear Algebra and Its Applications, 67, 137–145. doi:10.1016/0024-3795(85)90191-0
Examples
transition(5)
Estimate the sampling error variance for criterion profile analysis parameters
Description
Estimate the sampling error variance for criterion profile analysis parameters
Usage
var_error_cpa(
Rxx,
rxy,
n = NULL,
se_var_mat = NULL,
adjust = c("fisher", "pop", "cv")
)
Arguments
Rxx |
An intercorrelation matrix among the predictor variables |
rxy |
A vector of predictor–criterion correlations |
n |
The sample size. If NULL and |
se_var_mat |
A matrix of sampling covariance values for the elements of |
adjust |
Method to adjust R-squared for overfitting. See |
Value
A list containing sampling covariance matrices or sampling error variance estimates for CPA parameters
Examples
var_error_cpa(mindfulness$rho[1:5, 1:5], mindfulness$rho[1:5, 6], n = 17060)
Vectorize a matrix
Description
cvec
returns the column-wise vectorization of an input matrix (stacking
the columns on one another). rvec
returns the row-wise vectorization of an
input matrix (concatenating the rows after each other). vech
returns the
column-wise half-vectorization of an input matrix (stacking the lower
triangular elements of the matrix, including the diagonal). vechs
returns
the strict column-wise half-vectorization of an input matrix (stacking the
lower triangular elements of the matrix, excluding the diagonal). All
functions return the output as a vector.
Usage
vech(x)
vechs(x)
cvec(x)
rvec(x)
Arguments
x |
A matrix |
Value
A vector of values
Author(s)
Based on functions from the the OpenMx package
Examples
cvec(matrix(1:9, 3, 3))
rvec(matrix(1:9, 3, 3))
vech(matrix(1:9, 3, 3))
vechs(matrix(1:9, 3, 3))
vechs(matrix(1:12, 3, 4))
Inverse vectorize a matrix
Description
These functions return the symmetric matrix that produces the given half-vectorization result.
Usage
vech2full(x)
vechs2full(x, diagonal = 1)
Arguments
x |
A vector |
diagonal |
A value or vector of values to enter on the diagonal for |
Details
The input consists of a vector of the elements in the lower triangle
of the resulting matrix (for vech2full
, including the elements along the diagonal
of the matrix, as a column vector), filled column-wise. For vechs2full
,
the diagonal values are filled as 1 by default, alternative values can be
specified using the diag
argument. The inverse half-vectorization takes a
vector and reconstructs a symmetric matrix such that vech2full(vech(x)) is
identical to x if x is symmetric.
Value
A symmetric matrix
Author(s)
Based on functions from the the OpenMx package
Examples
vech2full(c(1, 2, 3, 5, 6, 9))
vechs2full(c(2, 3, 6), diagonal = 0)
Compute weighted covariances
Description
Compute the weighted covariance among variables in a matrix or between the variables in two separate matrices/vectors.
Usage
wt_cov(
x,
y = NULL,
wt = NULL,
as_cor = FALSE,
use = c("everything", "listwise", "pairwise"),
unbiased = TRUE,
df_type = c("count", "sum_wts")
)
wt_cor(x, y = NULL, wt = NULL, use = "everything")
Arguments
x |
Vector or matrix of x variables. |
y |
Vector or matrix of y variables |
wt |
Vector of weights |
as_cor |
Logical scalar that determines whether the covariances should be standardized (TRUE) or unstandardized (FALSE). |
use |
Method for handling missing values. "everything" uses all values and does not account for missingness, "listwise" uses only complete cases, and "pairwise" uses pairwise deletion. |
unbiased |
Logical scalar determining whether variance should be unbiased (TRUE) or maximum-likelihood (FALSE). |
df_type |
Character scalar determining whether the degrees of freedom for unbiased estimates should be based on numbers of cases (n - 1; "count"; default) or squared sums of weights (1 - sum(w^2); "sum_wts"). |
Value
Scalar, vector, or matrix of covariances.
Author(s)
Jeffrey A. Dahlke
Examples
wt_cov(x = c(1, 0, 2), y = c(1, 2, 3), wt = c(1, 2, 2), as_cor = FALSE, use = "everything")
wt_cov(x = c(1, 0, 2), y = c(1, 2, 3), wt = c(1, 2, 2), as_cor = TRUE, use = "everything")
wt_cov(x = cbind(c(1, 0, 2), c(1, 2, 3)), wt = c(1, 2, 2), as_cor = FALSE, use = "everything")
wt_cov(x = cbind(c(1, 0, 2), c(1, 2, 3)), wt = c(1, 2, 2), as_cor = TRUE, use = "everything")
wt_cov(x = cbind(c(1, 0, 2, NA), c(1, 2, 3, 3)),
wt = c(1, 2, 2, 1), as_cor = FALSE, use = "listwise")
wt_cov(x = cbind(c(1, 0, 2, NA), c(1, 2, 3, 3)),
wt = c(1, 2, 2, 1), as_cor = TRUE, use = "listwise")
Weighted descriptive statistics for a vector of numbers
Description
Compute the weighted mean and variance of a vector of numeric values. If no weights are supplied, defaults to computing the unweighted mean and the unweighted maximum-likelihood variance.
Usage
wt_dist(
x,
wt = rep(1, length(x)),
unbiased = TRUE,
df_type = c("count", "sum_wts")
)
wt_mean(x, wt = rep(1, length(x)))
wt_var(
x,
wt = rep(1, length(x)),
unbiased = TRUE,
df_type = c("count", "sum_wts")
)
Arguments
x |
Vector of values to be analyzed. |
wt |
Weights associated with the values in x. |
unbiased |
Logical scalar determining whether variance should be unbiased (TRUE) or maximum-likelihood (FALSE). |
df_type |
Character scalar determining whether the degrees of freedom for unbiased estimates should be based on numbers of cases ("count"; default) or sums of weights ("sum_wts"). |
Details
The weighted mean is computed as
\bar{x}_{w}=\frac{\Sigma_{i=1}^{k}x_{i}w_{i}}{\Sigma_{i=1}^{k}w_{i}}
where x is a numeric vector and w is a vector of weights.
The weighted variance is computed as
var_{w}(x)=\frac{\Sigma_{i=1}^{k}\left(x_{i}-\bar{x}_{w}\right)^{2}w_{i}}{\Sigma_{i=1}^{k}w_{i}}
and the unbiased weighted variance is estimated by multiplying var_{w}(x)
by \frac{k}{k-1}
.
Value
A weighted mean and variance if weights are supplied or an unweighted mean and variance if weights are not supplied.
Author(s)
Jeffrey A. Dahlke
Examples
wt_dist(x = c(.1, .3, .5), wt = c(100, 200, 300))
wt_mean(x = c(.1, .3, .5), wt = c(100, 200, 300))
wt_var(x = c(.1, .3, .5), wt = c(100, 200, 300))