Tools for the exploration of distributions of phylogenetic trees.
This package includes a 'shiny' interface which can be started from R using
treespaceServer().
For further details see Jombart et al. (2017) <doi:10.1111/1755-0998.12676>.
| Version: |
1.1.4.4 |
| Depends: |
R (≥ 3.4.0), ape, ade4 |
| Imports: |
adegenet, adegraphics, combinat, compiler, distory, fields, htmlwidgets, MASS, methods, parallel, phangorn, phytools, Rcpp, rgl, RLumShiny, scatterD3, shiny, shinyBS, utils |
| LinkingTo: |
Rcpp |
| Suggests: |
ggplot2, igraph, knitr, pander, RColorBrewer, reshape2, rmarkdown, sf, testthat |
| Published: |
2025-08-27 |
| DOI: |
10.32614/CRAN.package.treespace |
| Author: |
Thibaut Jombart 
[aut],
Michelle Kendall
[aut, cre],
Jacob Almagro-Garcia
[aut],
Caroline Colijn
[aut] |
| Maintainer: |
Michelle Kendall <michelle.kendall at ndm.ox.ac.uk> |
| BugReports: |
https://github.com/thibautjombart/treespace/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://cran.r-project.org/package=treespace,
https://github.com/thibautjombart/treespace |
| NeedsCompilation: |
yes |
| Citation: |
treespace citation info |
| Materials: |
README, NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
treespace results |